Hb_006351_050

Information

Type -
Description -
Location Contig6351: 85420-87469
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06280g
description POPTRDRAFT_1084546; hypothetical protein
nr
ID XP_011036029.1
description PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HHJ4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s06280g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51933: 85471-85926 , PASA_asmbl_51934: 85979-87497
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006351_050 0.0 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
2 Hb_001500_020 0.0311812184 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_180088_010 0.0420521352 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_003598_050 0.0661226821 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
5 Hb_000497_080 0.0690581859 - - conserved hypothetical protein [Ricinus communis]
6 Hb_112950_010 0.0752704312 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
7 Hb_007919_010 0.0764026652 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002260_140 0.0791957576 - - conserved hypothetical protein [Ricinus communis]
9 Hb_135757_030 0.0803658667 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
10 Hb_000172_450 0.080586643 - - Uncharacterized protein TCM_001203 [Theobroma cacao]
11 Hb_084304_010 0.0880078461 - - PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]
12 Hb_009079_020 0.08866483 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
13 Hb_009421_060 0.0902214727 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
14 Hb_013399_060 0.0931769086 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
15 Hb_000614_120 0.094380595 - - hypothetical protein JCGZ_17923 [Jatropha curcas]
16 Hb_000175_370 0.0964630535 - - hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
17 Hb_003197_050 0.0965803605 - - hypothetical protein JCGZ_04279 [Jatropha curcas]
18 Hb_000098_230 0.0967728004 - - Potassium channel AKT2/3, putative [Ricinus communis]
19 Hb_000230_220 0.0977552564 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000188_140 0.0990101007 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]

Gene co-expression network

sample Hb_006351_050 Hb_006351_050 Hb_001500_020 Hb_001500_020 Hb_006351_050--Hb_001500_020 Hb_180088_010 Hb_180088_010 Hb_006351_050--Hb_180088_010 Hb_003598_050 Hb_003598_050 Hb_006351_050--Hb_003598_050 Hb_000497_080 Hb_000497_080 Hb_006351_050--Hb_000497_080 Hb_112950_010 Hb_112950_010 Hb_006351_050--Hb_112950_010 Hb_007919_010 Hb_007919_010 Hb_006351_050--Hb_007919_010 Hb_001500_020--Hb_180088_010 Hb_001500_020--Hb_003598_050 Hb_001500_020--Hb_112950_010 Hb_135757_030 Hb_135757_030 Hb_001500_020--Hb_135757_030 Hb_000172_450 Hb_000172_450 Hb_001500_020--Hb_000172_450 Hb_180088_010--Hb_007919_010 Hb_180088_010--Hb_112950_010 Hb_009421_060 Hb_009421_060 Hb_180088_010--Hb_009421_060 Hb_180088_010--Hb_003598_050 Hb_003598_050--Hb_112950_010 Hb_003598_050--Hb_000497_080 Hb_002686_220 Hb_002686_220 Hb_003598_050--Hb_002686_220 Hb_003197_050 Hb_003197_050 Hb_000497_080--Hb_003197_050 Hb_000497_080--Hb_180088_010 Hb_000497_080--Hb_001500_020 Hb_017061_010 Hb_017061_010 Hb_000497_080--Hb_017061_010 Hb_000083_200 Hb_000083_200 Hb_112950_010--Hb_000083_200 Hb_112950_010--Hb_002686_220 Hb_001349_040 Hb_001349_040 Hb_112950_010--Hb_001349_040 Hb_000098_230 Hb_000098_230 Hb_007919_010--Hb_000098_230 Hb_000422_060 Hb_000422_060 Hb_007919_010--Hb_000422_060 Hb_007919_010--Hb_001500_020 Hb_001579_160 Hb_001579_160 Hb_007919_010--Hb_001579_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0161833 2.01343 2.7358 19.1196 0.0151598 0.0166715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.25564 2.23366

CAGE analysis