Hb_000497_080

Information

Type -
Description -
Location Contig497: 72067-73540
Sequence    

Annotation

kegg
ID rcu:RCOM_1438930
description hypothetical protein
nr
ID XP_002512705.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9RG36
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1438930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45513: 73344-73550 , PASA_asmbl_45514: 74221-74625
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000497_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006351_050 0.0690581859 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
3 Hb_003598_050 0.0701114342 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
4 Hb_003197_050 0.0795214287 - - hypothetical protein JCGZ_04279 [Jatropha curcas]
5 Hb_180088_010 0.0838885334 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_001500_020 0.0880657538 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_017061_010 0.0883311254 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
8 Hb_112950_010 0.0920859326 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
9 Hb_000230_220 0.093805183 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000155_030 0.095584719 - - PREDICTED: uncharacterized protein LOC105649591 [Jatropha curcas]
11 Hb_116349_080 0.0986993703 - - Nectarin-1 precursor, putative [Ricinus communis]
12 Hb_000614_120 0.0987196206 - - hypothetical protein JCGZ_17923 [Jatropha curcas]
13 Hb_003858_070 0.0993588131 - - PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
14 Hb_069384_010 0.1028553882 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
15 Hb_002260_140 0.1033478458 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000964_120 0.1047401807 - - DNA-damage-inducible protein f, putative [Ricinus communis]
17 Hb_001006_300 0.105345233 - - lipid binding protein, putative [Ricinus communis]
18 Hb_001818_010 0.1055332077 - - Disease resistance response protein, putative [Ricinus communis]
19 Hb_135757_030 0.1056447454 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
20 Hb_084304_010 0.1059328613 - - PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000497_080 Hb_000497_080 Hb_006351_050 Hb_006351_050 Hb_000497_080--Hb_006351_050 Hb_003598_050 Hb_003598_050 Hb_000497_080--Hb_003598_050 Hb_003197_050 Hb_003197_050 Hb_000497_080--Hb_003197_050 Hb_180088_010 Hb_180088_010 Hb_000497_080--Hb_180088_010 Hb_001500_020 Hb_001500_020 Hb_000497_080--Hb_001500_020 Hb_017061_010 Hb_017061_010 Hb_000497_080--Hb_017061_010 Hb_006351_050--Hb_001500_020 Hb_006351_050--Hb_180088_010 Hb_006351_050--Hb_003598_050 Hb_112950_010 Hb_112950_010 Hb_006351_050--Hb_112950_010 Hb_007919_010 Hb_007919_010 Hb_006351_050--Hb_007919_010 Hb_003598_050--Hb_112950_010 Hb_003598_050--Hb_001500_020 Hb_002686_220 Hb_002686_220 Hb_003598_050--Hb_002686_220 Hb_003598_050--Hb_180088_010 Hb_116349_080 Hb_116349_080 Hb_003197_050--Hb_116349_080 Hb_000155_030 Hb_000155_030 Hb_003197_050--Hb_000155_030 Hb_000230_220 Hb_000230_220 Hb_003197_050--Hb_000230_220 Hb_000964_120 Hb_000964_120 Hb_003197_050--Hb_000964_120 Hb_000934_120 Hb_000934_120 Hb_003197_050--Hb_000934_120 Hb_180088_010--Hb_001500_020 Hb_180088_010--Hb_007919_010 Hb_180088_010--Hb_112950_010 Hb_009421_060 Hb_009421_060 Hb_180088_010--Hb_009421_060 Hb_001500_020--Hb_112950_010 Hb_135757_030 Hb_135757_030 Hb_001500_020--Hb_135757_030 Hb_000172_450 Hb_000172_450 Hb_001500_020--Hb_000172_450 Hb_001006_300 Hb_001006_300 Hb_017061_010--Hb_001006_300 Hb_003858_070 Hb_003858_070 Hb_017061_010--Hb_003858_070 Hb_001898_030 Hb_001898_030 Hb_017061_010--Hb_001898_030 Hb_017061_010--Hb_000964_120 Hb_005144_150 Hb_005144_150 Hb_017061_010--Hb_005144_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.225445 0.480183 2.98423 0 0.0262113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0428172 0.279294

CAGE analysis