Hb_001898_030

Information

Type -
Description -
Location Contig1898: 44180-46159
Sequence    

Annotation

kegg
ID zma:100383797
description uncharacterized LOC100383797
nr
ID ACO25587.1
description protein kinase-coding resistance protein [Nicotiana repanda]
swissprot
ID P0DH62
description Inactive protein kinase SELMODRAFT_444075 OS=Selaginella moellendorffii GN=SELMODRAFT_444075 PE=2 SV=1
trembl
ID C1K132
description Protein kinase-coding resistance protein (Fragment) OS=Nicotiana repanda GN=RGA48 PE=4 SV=1
Gene Ontology
ID GO:0016772
description leucine-rich repeat receptor-like serine threonine-protein kinase bam1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001898_030 0.0 - - protein kinase-coding resistance protein [Nicotiana repanda]
2 Hb_002304_110 0.0598066038 - - hypothetical protein MIMGU_mgv1a023246mg [Erythranthe guttata]
3 Hb_017061_010 0.0679855111 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
4 Hb_001006_300 0.0712313979 - - lipid binding protein, putative [Ricinus communis]
5 Hb_090210_010 0.0802528748 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
6 Hb_002326_090 0.0809271371 - - amino acid transporter, putative [Ricinus communis]
7 Hb_007292_060 0.0840810667 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
8 Hb_003858_070 0.0848872454 - - PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
9 Hb_000964_120 0.08674134 - - DNA-damage-inducible protein f, putative [Ricinus communis]
10 Hb_005144_150 0.0875346331 - - hypothetical protein VITISV_013572 [Vitis vinifera]
11 Hb_000813_020 0.0937811477 - - PREDICTED: metacaspase-3-like [Jatropha curcas]
12 Hb_009367_070 0.0938469988 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
13 Hb_034713_010 0.095245544 - - PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]
14 Hb_003680_240 0.1092846477 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
15 Hb_000175_600 0.1137987821 - - PREDICTED: TATA-binding protein-associated factor 2N isoform X2 [Jatropha curcas]
16 Hb_000497_080 0.1162696977 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011218_010 0.1180116924 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
18 Hb_140627_040 0.1193606748 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
19 Hb_069384_010 0.1197072078 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
20 Hb_004102_180 0.121677709 - - zinc finger family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001898_030 Hb_001898_030 Hb_002304_110 Hb_002304_110 Hb_001898_030--Hb_002304_110 Hb_017061_010 Hb_017061_010 Hb_001898_030--Hb_017061_010 Hb_001006_300 Hb_001006_300 Hb_001898_030--Hb_001006_300 Hb_090210_010 Hb_090210_010 Hb_001898_030--Hb_090210_010 Hb_002326_090 Hb_002326_090 Hb_001898_030--Hb_002326_090 Hb_007292_060 Hb_007292_060 Hb_001898_030--Hb_007292_060 Hb_000813_020 Hb_000813_020 Hb_002304_110--Hb_000813_020 Hb_034713_010 Hb_034713_010 Hb_002304_110--Hb_034713_010 Hb_009367_070 Hb_009367_070 Hb_002304_110--Hb_009367_070 Hb_000334_090 Hb_000334_090 Hb_002304_110--Hb_000334_090 Hb_002304_110--Hb_017061_010 Hb_017061_010--Hb_001006_300 Hb_003858_070 Hb_003858_070 Hb_017061_010--Hb_003858_070 Hb_000964_120 Hb_000964_120 Hb_017061_010--Hb_000964_120 Hb_005144_150 Hb_005144_150 Hb_017061_010--Hb_005144_150 Hb_000497_080 Hb_000497_080 Hb_017061_010--Hb_000497_080 Hb_001006_300--Hb_003858_070 Hb_013399_060 Hb_013399_060 Hb_001006_300--Hb_013399_060 Hb_001006_300--Hb_000964_120 Hb_001006_300--Hb_005144_150 Hb_153258_030 Hb_153258_030 Hb_090210_010--Hb_153258_030 Hb_000731_180 Hb_000731_180 Hb_090210_010--Hb_000731_180 Hb_000796_110 Hb_000796_110 Hb_090210_010--Hb_000796_110 Hb_090210_010--Hb_007292_060 Hb_090210_010--Hb_002326_090 Hb_002999_020 Hb_002999_020 Hb_090210_010--Hb_002999_020 Hb_002326_090--Hb_007292_060 Hb_000175_600 Hb_000175_600 Hb_002326_090--Hb_000175_600 Hb_002326_090--Hb_000964_120 Hb_004102_180 Hb_004102_180 Hb_002326_090--Hb_004102_180 Hb_007292_060--Hb_000964_120 Hb_007292_060--Hb_000175_600 Hb_007292_060--Hb_004102_180 Hb_011218_010 Hb_011218_010 Hb_007292_060--Hb_011218_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.052786 0.294438 1.80594 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0692635 0.113659

CAGE analysis