Hb_034713_010

Information

Type -
Description -
Location Contig34713: 18945-19340
Sequence    

Annotation

kegg
ID pop:POPTR_0003s05860g
description POPTRDRAFT_645881; hypothetical protein
nr
ID XP_011035645.1
description PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GWN2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s05860g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36284: 18888-19616
cDNA
(Sanger)
(ID:Location)		 006_J12.ab1: 18888-19616

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034713_010 0.0 - - PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]
2 Hb_009367_070 0.0591404114 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
3 Hb_140627_040 0.0815844285 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
4 Hb_002304_110 0.0836188287 - - hypothetical protein MIMGU_mgv1a023246mg [Erythranthe guttata]
5 Hb_004705_060 0.0946269236 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
6 Hb_001898_030 0.095245544 - - protein kinase-coding resistance protein [Nicotiana repanda]
7 Hb_004112_080 0.1003875928 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
8 Hb_000813_020 0.1017419493 - - PREDICTED: metacaspase-3-like [Jatropha curcas]
9 Hb_039075_010 0.1027684811 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
10 Hb_002228_120 0.1101008364 - - potassium channel beta, putative [Ricinus communis]
11 Hb_000207_060 0.1123716101 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
12 Hb_051212_020 0.1133100572 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
13 Hb_017061_010 0.1146179823 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
14 Hb_085829_010 0.1152340223 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
15 Hb_002326_090 0.1156566561 - - amino acid transporter, putative [Ricinus communis]
16 Hb_030360_010 0.1177913876 - - -
17 Hb_090210_010 0.1215514557 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
18 Hb_003680_240 0.1232427635 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
19 Hb_000497_080 0.1236003638 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000334_090 0.1249623462 - - hypothetical protein JCGZ_16789 [Jatropha curcas]

Gene co-expression network

sample Hb_034713_010 Hb_034713_010 Hb_009367_070 Hb_009367_070 Hb_034713_010--Hb_009367_070 Hb_140627_040 Hb_140627_040 Hb_034713_010--Hb_140627_040 Hb_002304_110 Hb_002304_110 Hb_034713_010--Hb_002304_110 Hb_004705_060 Hb_004705_060 Hb_034713_010--Hb_004705_060 Hb_001898_030 Hb_001898_030 Hb_034713_010--Hb_001898_030 Hb_004112_080 Hb_004112_080 Hb_034713_010--Hb_004112_080 Hb_009367_070--Hb_004705_060 Hb_009367_070--Hb_004112_080 Hb_009367_070--Hb_140627_040 Hb_011628_010 Hb_011628_010 Hb_009367_070--Hb_011628_010 Hb_000207_060 Hb_000207_060 Hb_009367_070--Hb_000207_060 Hb_003680_240 Hb_003680_240 Hb_140627_040--Hb_003680_240 Hb_051212_020 Hb_051212_020 Hb_140627_040--Hb_051212_020 Hb_140627_040--Hb_000207_060 Hb_009062_020 Hb_009062_020 Hb_140627_040--Hb_009062_020 Hb_002304_110--Hb_001898_030 Hb_000813_020 Hb_000813_020 Hb_002304_110--Hb_000813_020 Hb_002304_110--Hb_009367_070 Hb_000334_090 Hb_000334_090 Hb_002304_110--Hb_000334_090 Hb_017061_010 Hb_017061_010 Hb_002304_110--Hb_017061_010 Hb_085829_010 Hb_085829_010 Hb_004705_060--Hb_085829_010 Hb_000333_140 Hb_000333_140 Hb_004705_060--Hb_000333_140 Hb_004705_060--Hb_004112_080 Hb_004705_060--Hb_000207_060 Hb_001898_030--Hb_017061_010 Hb_001006_300 Hb_001006_300 Hb_001898_030--Hb_001006_300 Hb_090210_010 Hb_090210_010 Hb_001898_030--Hb_090210_010 Hb_002326_090 Hb_002326_090 Hb_001898_030--Hb_002326_090 Hb_007292_060 Hb_007292_060 Hb_001898_030--Hb_007292_060 Hb_030360_010 Hb_030360_010 Hb_004112_080--Hb_030360_010 Hb_039075_010 Hb_039075_010 Hb_004112_080--Hb_039075_010 Hb_004112_080--Hb_011628_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.342682 1.74078 11.0115 44.3117 0 0.255178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.98705 3.3544

CAGE analysis