Hb_039075_010

Information

Type -
Description -
Location Contig39075: 1154-2923
Sequence    

Annotation

kegg
ID pop:POPTR_0017s06330g
description hypothetical protein
nr
ID KDP42829.1
description hypothetical protein JCGZ_23771 [Jatropha curcas]
swissprot
ID Q3ECH2
description Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2
trembl
ID A0A067LFF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23771 PE=3 SV=1
Gene Ontology
ID GO:0004672
description receptor serine threonine

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39171: 892-1200
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039075_010 0.0 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
2 Hb_030360_010 0.0544976084 - - -
3 Hb_000310_040 0.0750909674 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
4 Hb_016911_010 0.075170928 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
5 Hb_004112_080 0.0880043099 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
6 Hb_000333_140 0.0914528503 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
7 Hb_011628_010 0.0915277813 - - tonoplast intrinsic protein, putative [Ricinus communis]
8 Hb_000739_190 0.0925857468 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
9 Hb_009367_070 0.0945419647 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
10 Hb_003427_070 0.0963997746 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
11 Hb_009062_020 0.0975238313 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo]
12 Hb_051212_020 0.0997804541 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
13 Hb_004732_070 0.1002134672 - - conserved hypothetical protein [Ricinus communis]
14 Hb_034713_010 0.1027684811 - - PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]
15 Hb_003777_150 0.1057194507 - - PREDICTED: uncharacterized protein LOC105640938 isoform X1 [Jatropha curcas]
16 Hb_084304_010 0.1074364452 - - PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]
17 Hb_015292_020 0.1090970403 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
18 Hb_004705_060 0.1113159409 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
19 Hb_001136_080 0.1123565122 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
20 Hb_089040_010 0.1128477389 - - Glycosyl hydrolase family protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_039075_010 Hb_039075_010 Hb_030360_010 Hb_030360_010 Hb_039075_010--Hb_030360_010 Hb_000310_040 Hb_000310_040 Hb_039075_010--Hb_000310_040 Hb_016911_010 Hb_016911_010 Hb_039075_010--Hb_016911_010 Hb_004112_080 Hb_004112_080 Hb_039075_010--Hb_004112_080 Hb_000333_140 Hb_000333_140 Hb_039075_010--Hb_000333_140 Hb_011628_010 Hb_011628_010 Hb_039075_010--Hb_011628_010 Hb_030360_010--Hb_004112_080 Hb_000739_190 Hb_000739_190 Hb_030360_010--Hb_000739_190 Hb_030360_010--Hb_000310_040 Hb_030360_010--Hb_011628_010 Hb_004705_060 Hb_004705_060 Hb_030360_010--Hb_004705_060 Hb_000310_040--Hb_000333_140 Hb_005211_170 Hb_005211_170 Hb_000310_040--Hb_005211_170 Hb_004732_070 Hb_004732_070 Hb_000310_040--Hb_004732_070 Hb_000861_060 Hb_000861_060 Hb_000310_040--Hb_000861_060 Hb_009062_020 Hb_009062_020 Hb_016911_010--Hb_009062_020 Hb_001136_080 Hb_001136_080 Hb_016911_010--Hb_001136_080 Hb_051212_020 Hb_051212_020 Hb_016911_010--Hb_051212_020 Hb_001775_140 Hb_001775_140 Hb_016911_010--Hb_001775_140 Hb_015292_020 Hb_015292_020 Hb_016911_010--Hb_015292_020 Hb_009367_070 Hb_009367_070 Hb_004112_080--Hb_009367_070 Hb_004112_080--Hb_004705_060 Hb_004112_080--Hb_011628_010 Hb_034713_010 Hb_034713_010 Hb_004112_080--Hb_034713_010 Hb_000333_140--Hb_011628_010 Hb_000333_140--Hb_005211_170 Hb_000333_140--Hb_001136_080 Hb_000333_140--Hb_015292_020 Hb_002307_150 Hb_002307_150 Hb_000333_140--Hb_002307_150 Hb_011628_010--Hb_001136_080 Hb_011628_010--Hb_002307_150 Hb_011628_010--Hb_005211_170 Hb_011628_010--Hb_009367_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0193047 0.340639 1.33599 3.92631 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0974794 0.286207

CAGE analysis