Hb_001775_140

Information

Type -
Description -
Location Contig1775: 141206-141563
Sequence    

Annotation

kegg
ID pop:POPTR_0004s19970g
description phytosulfokines 6 precursor family protein
nr
ID XP_007015943.1
description Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]
swissprot
ID Q8LA14
description Putative phytosulfokines 6 OS=Arabidopsis thaliana GN=PSK6 PE=2 SV=2
trembl
ID A0A061GWJ4
description Phytosulfokine 3, putative isoform 2 OS=Theobroma cacao GN=TCM_041507 PE=4 SV=1
Gene Ontology
ID GO:0005576
description phytosulfokines 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17047: 141011-141735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001775_140 0.0 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]
2 Hb_000934_120 0.0780250802 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
3 Hb_016911_010 0.0788343222 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
4 Hb_009062_020 0.0834499319 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo]
5 Hb_016734_110 0.0874054802 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
6 Hb_001136_080 0.0875149243 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
7 Hb_001623_560 0.0899566738 - - late embryogenesis abundant protein group 9 protein [Arachis hypogaea]
8 Hb_001975_110 0.0903606895 - - -
9 Hb_000005_290 0.0909513824 - - Serine carboxypeptidase, putative [Ricinus communis]
10 Hb_026218_010 0.0928985552 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000666_040 0.0949260459 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
12 Hb_005731_040 0.0995274301 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
13 Hb_002309_020 0.1016678083 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
14 Hb_001709_120 0.1044343557 - - hypothetical protein RCOM_1313640 [Ricinus communis]
15 Hb_051212_020 0.1098043659 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
16 Hb_007317_050 0.1103547439 - - hypothetical protein POPTR_0009s16550g [Populus trichocarpa]
17 Hb_006483_070 0.1123645763 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
18 Hb_000796_110 0.112558931 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]
19 Hb_015292_020 0.1130461514 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_011628_010 0.1131224772 - - tonoplast intrinsic protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001775_140 Hb_001775_140 Hb_000934_120 Hb_000934_120 Hb_001775_140--Hb_000934_120 Hb_016911_010 Hb_016911_010 Hb_001775_140--Hb_016911_010 Hb_009062_020 Hb_009062_020 Hb_001775_140--Hb_009062_020 Hb_016734_110 Hb_016734_110 Hb_001775_140--Hb_016734_110 Hb_001136_080 Hb_001136_080 Hb_001775_140--Hb_001136_080 Hb_001623_560 Hb_001623_560 Hb_001775_140--Hb_001623_560 Hb_000796_110 Hb_000796_110 Hb_000934_120--Hb_000796_110 Hb_000934_120--Hb_016911_010 Hb_051212_020 Hb_051212_020 Hb_000934_120--Hb_051212_020 Hb_000934_120--Hb_009062_020 Hb_003197_050 Hb_003197_050 Hb_000934_120--Hb_003197_050 Hb_016911_010--Hb_009062_020 Hb_016911_010--Hb_001136_080 Hb_039075_010 Hb_039075_010 Hb_016911_010--Hb_039075_010 Hb_016911_010--Hb_051212_020 Hb_015292_020 Hb_015292_020 Hb_016911_010--Hb_015292_020 Hb_009062_020--Hb_001136_080 Hb_009062_020--Hb_015292_020 Hb_009062_020--Hb_051212_020 Hb_002999_020 Hb_002999_020 Hb_016734_110--Hb_002999_020 Hb_000666_040 Hb_000666_040 Hb_016734_110--Hb_000666_040 Hb_001568_040 Hb_001568_040 Hb_016734_110--Hb_001568_040 Hb_000742_040 Hb_000742_040 Hb_016734_110--Hb_000742_040 Hb_153258_030 Hb_153258_030 Hb_016734_110--Hb_153258_030 Hb_001496_150 Hb_001496_150 Hb_016734_110--Hb_001496_150 Hb_000333_140 Hb_000333_140 Hb_001136_080--Hb_000333_140 Hb_011628_010 Hb_011628_010 Hb_001136_080--Hb_011628_010 Hb_006483_070 Hb_006483_070 Hb_001136_080--Hb_006483_070 Hb_001709_120 Hb_001709_120 Hb_001136_080--Hb_001709_120 Hb_001623_560--Hb_000666_040 Hb_001623_560--Hb_016734_110 Hb_009662_040 Hb_009662_040 Hb_001623_560--Hb_009662_040 Hb_001623_560--Hb_000742_040 Hb_001623_560--Hb_002999_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.58225 26.3019 63.6803 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 7.59211

CAGE analysis