Hb_006483_070

Information

Type -
Description -
Location Contig6483: 67029-68523
Sequence    

Annotation

kegg
ID rcu:RCOM_1408620
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_002523596.1
description cinnamoyl-CoA reductase, putative [Ricinus communis]
swissprot
ID Q500U8
description Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=1 SV=1
trembl
ID B9SC77
description Cinnamoyl-CoA reductase, putative OS=Ricinus communis GN=RCOM_1408620 PE=4 SV=1
Gene Ontology
ID GO:0005634
description tetraketide alpha-pyrone reductase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52447: 66940-68446
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006483_070 0.0 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
2 Hb_001025_130 0.0793478371 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
3 Hb_001709_120 0.0845850747 - - hypothetical protein RCOM_1313640 [Ricinus communis]
4 Hb_001136_080 0.0846861889 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
5 Hb_162472_010 0.0976337116 - - conserved hypothetical protein [Ricinus communis]
6 Hb_015292_020 0.0992922272 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_001975_110 0.1024867695 - - -
8 Hb_002276_080 0.1047728196 - - Protein bem46, putative [Ricinus communis]
9 Hb_002902_060 0.1091796427 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
10 Hb_007122_020 0.1118754703 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
11 Hb_000333_140 0.1120670756 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
12 Hb_001775_140 0.1123645763 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]
13 Hb_016911_010 0.1129918964 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
14 Hb_009062_020 0.1133613909 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo]
15 Hb_000005_290 0.1136555632 - - Serine carboxypeptidase, putative [Ricinus communis]
16 Hb_026218_010 0.1152669307 - - conserved hypothetical protein [Ricinus communis]
17 Hb_174639_010 0.1209914527 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000586_110 0.1210887668 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
19 Hb_000413_120 0.1255575778 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
20 Hb_005731_040 0.1260646799 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]

Gene co-expression network

sample Hb_006483_070 Hb_006483_070 Hb_001025_130 Hb_001025_130 Hb_006483_070--Hb_001025_130 Hb_001709_120 Hb_001709_120 Hb_006483_070--Hb_001709_120 Hb_001136_080 Hb_001136_080 Hb_006483_070--Hb_001136_080 Hb_162472_010 Hb_162472_010 Hb_006483_070--Hb_162472_010 Hb_015292_020 Hb_015292_020 Hb_006483_070--Hb_015292_020 Hb_001975_110 Hb_001975_110 Hb_006483_070--Hb_001975_110 Hb_001025_130--Hb_001709_120 Hb_001025_130--Hb_015292_020 Hb_000586_110 Hb_000586_110 Hb_001025_130--Hb_000586_110 Hb_002902_060 Hb_002902_060 Hb_001025_130--Hb_002902_060 Hb_001025_130--Hb_162472_010 Hb_001709_120--Hb_015292_020 Hb_001709_120--Hb_002902_060 Hb_174639_010 Hb_174639_010 Hb_001709_120--Hb_174639_010 Hb_001056_040 Hb_001056_040 Hb_001709_120--Hb_001056_040 Hb_000333_140 Hb_000333_140 Hb_001136_080--Hb_000333_140 Hb_016911_010 Hb_016911_010 Hb_001136_080--Hb_016911_010 Hb_009062_020 Hb_009062_020 Hb_001136_080--Hb_009062_020 Hb_011628_010 Hb_011628_010 Hb_001136_080--Hb_011628_010 Hb_001136_080--Hb_001709_120 Hb_162472_010--Hb_001975_110 Hb_002276_080 Hb_002276_080 Hb_162472_010--Hb_002276_080 Hb_162472_010--Hb_001709_120 Hb_000005_290 Hb_000005_290 Hb_162472_010--Hb_000005_290 Hb_015292_020--Hb_000333_140 Hb_015292_020--Hb_002902_060 Hb_015292_020--Hb_016911_010 Hb_007122_020 Hb_007122_020 Hb_015292_020--Hb_007122_020 Hb_001975_110--Hb_000005_290 Hb_001975_110--Hb_007122_020 Hb_002309_020 Hb_002309_020 Hb_001975_110--Hb_002309_020 Hb_002636_120 Hb_002636_120 Hb_001975_110--Hb_002636_120 Hb_000317_380 Hb_000317_380 Hb_001975_110--Hb_000317_380 Hb_002783_100 Hb_002783_100 Hb_001975_110--Hb_002783_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0200124 0.250042 3.32094 6.5221 0.0602106 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0720066 0 0.0578053 1.18507

CAGE analysis