Hb_162472_010

Information

Type -
Description -
Location Contig162472: 281-733
Sequence    

Annotation

kegg
ID rcu:RCOM_1348340
description hypothetical protein
nr
ID XP_002515331.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RNJ2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1348340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162472_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001025_130 0.0850730888 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
3 Hb_001975_110 0.0878930015 - - -
4 Hb_002276_080 0.0913553819 - - Protein bem46, putative [Ricinus communis]
5 Hb_006483_070 0.0976337116 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
6 Hb_001709_120 0.0993088659 - - hypothetical protein RCOM_1313640 [Ricinus communis]
7 Hb_000005_290 0.1033312115 - - Serine carboxypeptidase, putative [Ricinus communis]
8 Hb_000317_380 0.1043190336 - - Peroxidase 47 precursor, putative [Ricinus communis]
9 Hb_004195_070 0.1066295973 - - cytochrome P450, putative [Ricinus communis]
10 Hb_015292_020 0.1067262399 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_002902_060 0.106907541 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
12 Hb_033720_030 0.1094359906 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
13 Hb_007122_020 0.1110811913 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
14 Hb_000140_320 0.1139065773 - - delta-8 sphingolipid desaturase [Vernicia fordii]
15 Hb_002636_120 0.1141640713 - - Protein bem46, putative [Ricinus communis]
16 Hb_026218_010 0.1151953903 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002783_280 0.1188749536 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
18 Hb_000413_120 0.1197678125 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
19 Hb_000320_010 0.1198441906 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011618_110 0.1211416198 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]

Gene co-expression network

sample Hb_162472_010 Hb_162472_010 Hb_001025_130 Hb_001025_130 Hb_162472_010--Hb_001025_130 Hb_001975_110 Hb_001975_110 Hb_162472_010--Hb_001975_110 Hb_002276_080 Hb_002276_080 Hb_162472_010--Hb_002276_080 Hb_006483_070 Hb_006483_070 Hb_162472_010--Hb_006483_070 Hb_001709_120 Hb_001709_120 Hb_162472_010--Hb_001709_120 Hb_000005_290 Hb_000005_290 Hb_162472_010--Hb_000005_290 Hb_001025_130--Hb_001709_120 Hb_015292_020 Hb_015292_020 Hb_001025_130--Hb_015292_020 Hb_001025_130--Hb_006483_070 Hb_000586_110 Hb_000586_110 Hb_001025_130--Hb_000586_110 Hb_002902_060 Hb_002902_060 Hb_001025_130--Hb_002902_060 Hb_001975_110--Hb_000005_290 Hb_007122_020 Hb_007122_020 Hb_001975_110--Hb_007122_020 Hb_002309_020 Hb_002309_020 Hb_001975_110--Hb_002309_020 Hb_002636_120 Hb_002636_120 Hb_001975_110--Hb_002636_120 Hb_000317_380 Hb_000317_380 Hb_001975_110--Hb_000317_380 Hb_002783_100 Hb_002783_100 Hb_001975_110--Hb_002783_100 Hb_004899_230 Hb_004899_230 Hb_002276_080--Hb_004899_230 Hb_002276_080--Hb_006483_070 Hb_002276_080--Hb_000005_290 Hb_033720_030 Hb_033720_030 Hb_002276_080--Hb_033720_030 Hb_004162_200 Hb_004162_200 Hb_002276_080--Hb_004162_200 Hb_006483_070--Hb_001709_120 Hb_001136_080 Hb_001136_080 Hb_006483_070--Hb_001136_080 Hb_006483_070--Hb_015292_020 Hb_006483_070--Hb_001975_110 Hb_001709_120--Hb_015292_020 Hb_001709_120--Hb_002902_060 Hb_174639_010 Hb_174639_010 Hb_001709_120--Hb_174639_010 Hb_001056_040 Hb_001056_040 Hb_001709_120--Hb_001056_040 Hb_000005_290--Hb_002309_020 Hb_029883_010 Hb_029883_010 Hb_000005_290--Hb_029883_010 Hb_000005_290--Hb_004899_230 Hb_002092_060 Hb_002092_060 Hb_000005_290--Hb_002092_060 Hb_000005_290--Hb_002783_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0869308 2.74314 37.3595 78.3604 0.25389 0.987072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.158655 0.249243 0.412949 0.261826 18.4208

CAGE analysis