Hb_002092_060

Information

Type -
Description -
Location Contig2092: 41965-42334
Sequence    

Annotation

kegg
ID rcu:RCOM_0149340
description hypothetical protein
nr
ID XP_002532650.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID B9T331
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0149340 PE=4 SV=1
Gene Ontology
ID GO:0046872
description heavy metal-associated isoprenylated plant protein 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21630: 41767-41999
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002092_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_015175_070 0.0424157698 - - cysteine protease, putative [Ricinus communis]
3 Hb_002309_020 0.0440655201 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
4 Hb_005295_030 0.0678002548 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
5 Hb_000005_290 0.0732963003 - - Serine carboxypeptidase, putative [Ricinus communis]
6 Hb_000310_050 0.0770162937 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_000317_380 0.077066393 - - Peroxidase 47 precursor, putative [Ricinus communis]
8 Hb_000724_060 0.0819183381 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
9 Hb_001975_110 0.0853421667 - - -
10 Hb_006977_010 0.0863092618 - - unnamed protein product [Vitis vinifera]
11 Hb_002686_220 0.0902050191 - - PREDICTED: expansin-A15-like [Jatropha curcas]
12 Hb_002783_100 0.0910163288 - - Zeamatin precursor, putative [Ricinus communis]
13 Hb_000336_120 0.091731259 - - PREDICTED: mavicyanin [Populus euphratica]
14 Hb_004899_230 0.0930452977 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
15 Hb_001349_040 0.0995480469 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
16 Hb_000866_130 0.100446885 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
17 Hb_007122_020 0.1022824363 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
18 Hb_006153_140 0.1034583784 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
19 Hb_001136_040 0.1039213218 - - amino acid transporter, putative [Ricinus communis]
20 Hb_009079_020 0.1044001027 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002092_060 Hb_002092_060 Hb_015175_070 Hb_015175_070 Hb_002092_060--Hb_015175_070 Hb_002309_020 Hb_002309_020 Hb_002092_060--Hb_002309_020 Hb_005295_030 Hb_005295_030 Hb_002092_060--Hb_005295_030 Hb_000005_290 Hb_000005_290 Hb_002092_060--Hb_000005_290 Hb_000310_050 Hb_000310_050 Hb_002092_060--Hb_000310_050 Hb_000317_380 Hb_000317_380 Hb_002092_060--Hb_000317_380 Hb_000336_120 Hb_000336_120 Hb_015175_070--Hb_000336_120 Hb_015175_070--Hb_000310_050 Hb_015175_070--Hb_002309_020 Hb_015175_070--Hb_005295_030 Hb_001349_040 Hb_001349_040 Hb_015175_070--Hb_001349_040 Hb_002309_020--Hb_000005_290 Hb_001975_110 Hb_001975_110 Hb_002309_020--Hb_001975_110 Hb_002309_020--Hb_005295_030 Hb_001496_150 Hb_001496_150 Hb_002309_020--Hb_001496_150 Hb_006977_010 Hb_006977_010 Hb_005295_030--Hb_006977_010 Hb_004162_200 Hb_004162_200 Hb_005295_030--Hb_004162_200 Hb_004899_230 Hb_004899_230 Hb_005295_030--Hb_004899_230 Hb_000005_290--Hb_001975_110 Hb_029883_010 Hb_029883_010 Hb_000005_290--Hb_029883_010 Hb_000005_290--Hb_004899_230 Hb_002783_100 Hb_002783_100 Hb_000005_290--Hb_002783_100 Hb_006573_120 Hb_006573_120 Hb_000310_050--Hb_006573_120 Hb_000310_050--Hb_000336_120 Hb_012114_090 Hb_012114_090 Hb_000310_050--Hb_012114_090 Hb_000310_050--Hb_001349_040 Hb_000699_220 Hb_000699_220 Hb_000310_050--Hb_000699_220 Hb_000317_380--Hb_002783_100 Hb_000317_380--Hb_001975_110 Hb_000317_380--Hb_002309_020 Hb_000317_380--Hb_015175_070 Hb_000317_380--Hb_000005_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.201707 1.16498 4.42246 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.10597

CAGE analysis