Hb_002783_100

Information

Type -
Description -
Location Contig2783: 108509-109567
Sequence    

Annotation

kegg
ID rcu:RCOM_1598240
description Zeamatin precursor, putative
nr
ID XP_002510549.1
description Zeamatin precursor, putative [Ricinus communis]
swissprot
ID P50699
description Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2
trembl
ID B9R8A6
description Zeamatin, putative OS=Ricinus communis GN=RCOM_1598240 PE=4 SV=1
Gene Ontology
ID GO:0009617
description thaumatin-like protein 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29041: 108367-109645
cDNA
(Sanger)
(ID:Location)		 048_F03.ab1: 108820-109645

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_100 0.0 - - Zeamatin precursor, putative [Ricinus communis]
2 Hb_000317_380 0.0735582073 - - Peroxidase 47 precursor, putative [Ricinus communis]
3 Hb_000005_290 0.0817405409 - - Serine carboxypeptidase, putative [Ricinus communis]
4 Hb_001975_110 0.0818022576 - - -
5 Hb_050898_040 0.0865593986 - - -
6 Hb_002309_020 0.0865883344 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
7 Hb_004162_200 0.0878384226 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
8 Hb_005295_030 0.0905281412 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
9 Hb_002092_060 0.0910163288 - - conserved hypothetical protein [Ricinus communis]
10 Hb_029883_010 0.1001736765 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_015175_070 0.1009690709 - - cysteine protease, putative [Ricinus communis]
12 Hb_009151_010 0.1041707239 - - Peroxidase 3 [Morus notabilis]
13 Hb_004899_230 0.1045011793 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
14 Hb_001496_150 0.1057923071 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
15 Hb_002902_060 0.1071038015 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
16 Hb_007122_020 0.1077454663 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
17 Hb_002067_070 0.1096070744 - - hypothetical protein JCGZ_19254 [Jatropha curcas]
18 Hb_003544_080 0.1100452762 - - Protein HVA22, putative [Ricinus communis]
19 Hb_132381_010 0.1100969809 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_002311_030 0.113267307 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002783_100 Hb_002783_100 Hb_000317_380 Hb_000317_380 Hb_002783_100--Hb_000317_380 Hb_000005_290 Hb_000005_290 Hb_002783_100--Hb_000005_290 Hb_001975_110 Hb_001975_110 Hb_002783_100--Hb_001975_110 Hb_050898_040 Hb_050898_040 Hb_002783_100--Hb_050898_040 Hb_002309_020 Hb_002309_020 Hb_002783_100--Hb_002309_020 Hb_004162_200 Hb_004162_200 Hb_002783_100--Hb_004162_200 Hb_002092_060 Hb_002092_060 Hb_000317_380--Hb_002092_060 Hb_000317_380--Hb_001975_110 Hb_000317_380--Hb_002309_020 Hb_015175_070 Hb_015175_070 Hb_000317_380--Hb_015175_070 Hb_000317_380--Hb_000005_290 Hb_000005_290--Hb_002309_020 Hb_000005_290--Hb_001975_110 Hb_029883_010 Hb_029883_010 Hb_000005_290--Hb_029883_010 Hb_004899_230 Hb_004899_230 Hb_000005_290--Hb_004899_230 Hb_000005_290--Hb_002092_060 Hb_007122_020 Hb_007122_020 Hb_001975_110--Hb_007122_020 Hb_001975_110--Hb_002309_020 Hb_002636_120 Hb_002636_120 Hb_001975_110--Hb_002636_120 Hb_050898_040--Hb_029883_010 Hb_050898_040--Hb_004162_200 Hb_004686_040 Hb_004686_040 Hb_050898_040--Hb_004686_040 Hb_000020_170 Hb_000020_170 Hb_050898_040--Hb_000020_170 Hb_005295_030 Hb_005295_030 Hb_050898_040--Hb_005295_030 Hb_002309_020--Hb_002092_060 Hb_002309_020--Hb_015175_070 Hb_002309_020--Hb_005295_030 Hb_001496_150 Hb_001496_150 Hb_002309_020--Hb_001496_150 Hb_002067_070 Hb_002067_070 Hb_004162_200--Hb_002067_070 Hb_002311_030 Hb_002311_030 Hb_004162_200--Hb_002311_030 Hb_007113_060 Hb_007113_060 Hb_004162_200--Hb_007113_060 Hb_004162_200--Hb_005295_030 Hb_009151_010 Hb_009151_010 Hb_004162_200--Hb_009151_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.135706 1.77013 5.67205 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0531242 0 0 0.050453 1.36376

CAGE analysis