Hb_007113_060

Information

Type -
Description -
Location Contig7113: 47091-48790
Sequence    

Annotation

kegg
ID cam:101509334
description rac-like GTP-binding protein RAC2-like
nr
ID XP_012079027.1
description PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
swissprot
ID Q6Z7L8
description Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1
trembl
ID A0A067KIX7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12225 PE=3 SV=1
Gene Ontology
ID GO:0005737
description rac-like gtp-binding protein rac2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55296: 47298-47699 , PASA_asmbl_55297: 47725-48120 , PASA_asmbl_55298: 48213-48783
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007113_060 0.0 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
2 Hb_006922_120 0.058372223 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
3 Hb_000816_140 0.0668153517 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
4 Hb_005440_040 0.0680642532 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
5 Hb_002311_030 0.0696815241 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004162_200 0.0702891413 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
7 Hb_162450_010 0.0732803114 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
8 Hb_006977_010 0.0781804655 - - unnamed protein product [Vitis vinifera]
9 Hb_009151_010 0.0805057019 - - Peroxidase 3 [Morus notabilis]
10 Hb_005269_060 0.0809931613 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]
11 Hb_005116_150 0.0858949613 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
12 Hb_057862_010 0.0862569436 - - protein binding protein, putative [Ricinus communis]
13 Hb_000057_090 0.0874549469 - - hypothetical protein RCOM_1494490 [Ricinus communis]
14 Hb_010883_170 0.0876802488 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
15 Hb_004218_270 0.0878323355 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
16 Hb_031984_020 0.0884882332 - - conserved hypothetical protein [Ricinus communis]
17 Hb_093084_030 0.0890746182 - - oleosin2 [Plukenetia volubilis]
18 Hb_166360_010 0.0897525622 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
19 Hb_185608_010 0.0900046537 - - hypothetical protein POPTR_0004s22210g [Populus trichocarpa]
20 Hb_000531_030 0.0902324036 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007113_060 Hb_007113_060 Hb_006922_120 Hb_006922_120 Hb_007113_060--Hb_006922_120 Hb_000816_140 Hb_000816_140 Hb_007113_060--Hb_000816_140 Hb_005440_040 Hb_005440_040 Hb_007113_060--Hb_005440_040 Hb_002311_030 Hb_002311_030 Hb_007113_060--Hb_002311_030 Hb_004162_200 Hb_004162_200 Hb_007113_060--Hb_004162_200 Hb_162450_010 Hb_162450_010 Hb_007113_060--Hb_162450_010 Hb_006977_010 Hb_006977_010 Hb_006922_120--Hb_006977_010 Hb_013749_040 Hb_013749_040 Hb_006922_120--Hb_013749_040 Hb_006922_120--Hb_000816_140 Hb_006922_120--Hb_005440_040 Hb_010883_170 Hb_010883_170 Hb_006922_120--Hb_010883_170 Hb_000816_140--Hb_010883_170 Hb_012653_050 Hb_012653_050 Hb_000816_140--Hb_012653_050 Hb_000815_050 Hb_000815_050 Hb_000816_140--Hb_000815_050 Hb_000057_090 Hb_000057_090 Hb_000816_140--Hb_000057_090 Hb_000227_360 Hb_000227_360 Hb_005440_040--Hb_000227_360 Hb_003858_010 Hb_003858_010 Hb_005440_040--Hb_003858_010 Hb_000531_030 Hb_000531_030 Hb_005440_040--Hb_000531_030 Hb_108090_010 Hb_108090_010 Hb_005440_040--Hb_108090_010 Hb_002311_030--Hb_004162_200 Hb_002740_140 Hb_002740_140 Hb_002311_030--Hb_002740_140 Hb_009151_010 Hb_009151_010 Hb_002311_030--Hb_009151_010 Hb_057862_010 Hb_057862_010 Hb_002311_030--Hb_057862_010 Hb_002311_030--Hb_162450_010 Hb_002067_070 Hb_002067_070 Hb_004162_200--Hb_002067_070 Hb_005295_030 Hb_005295_030 Hb_004162_200--Hb_005295_030 Hb_004162_200--Hb_009151_010 Hb_050898_040 Hb_050898_040 Hb_004162_200--Hb_050898_040 Hb_166360_010 Hb_166360_010 Hb_162450_010--Hb_166360_010 Hb_004218_270 Hb_004218_270 Hb_162450_010--Hb_004218_270 Hb_093084_030 Hb_093084_030 Hb_162450_010--Hb_093084_030 Hb_162450_010--Hb_057862_010 Hb_185608_010 Hb_185608_010 Hb_162450_010--Hb_185608_010 Hb_005532_080 Hb_005532_080 Hb_162450_010--Hb_005532_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.135818 0.322082 9.08706 29.3806 0.0247595 0.0652852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.197342 12.8434

CAGE analysis