Hb_050898_040

Information

Type -
Description -
Location Contig50898: 41687-42276
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46218: 41676-42270
cDNA
(Sanger)
(ID:Location)		 024_N15.ab1: 41676-42264

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050898_040 0.0 - - -
2 Hb_029883_010 0.0674767665 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
3 Hb_004162_200 0.0769955356 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
4 Hb_004686_040 0.0806583526 - - hypothetical protein POPTR_0016s05690g [Populus trichocarpa]
5 Hb_000020_170 0.0853991489 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
6 Hb_002783_100 0.0865593986 - - Zeamatin precursor, putative [Ricinus communis]
7 Hb_005295_030 0.0884957724 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
8 Hb_005614_060 0.0900547283 - - Uncharacterized protein TCM_019750 [Theobroma cacao]
9 Hb_001568_040 0.0905695563 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002740_140 0.0918186885 - - hypothetical protein L484_022679 [Morus notabilis]
11 Hb_000049_190 0.0918684596 - - nucleotide binding protein, putative [Ricinus communis]
12 Hb_002311_030 0.0939611715 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001496_150 0.0942236857 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
14 Hb_000005_290 0.0955157696 - - Serine carboxypeptidase, putative [Ricinus communis]
15 Hb_002067_070 0.0972279445 - - hypothetical protein JCGZ_19254 [Jatropha curcas]
16 Hb_000227_290 0.100888145 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
17 Hb_000134_190 0.1010756593 - - hypothetical protein JCGZ_16725 [Jatropha curcas]
18 Hb_001357_110 0.1014018549 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
19 Hb_004440_030 0.1050445564 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
20 Hb_004218_270 0.1058462106 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_050898_040 Hb_050898_040 Hb_029883_010 Hb_029883_010 Hb_050898_040--Hb_029883_010 Hb_004162_200 Hb_004162_200 Hb_050898_040--Hb_004162_200 Hb_004686_040 Hb_004686_040 Hb_050898_040--Hb_004686_040 Hb_000020_170 Hb_000020_170 Hb_050898_040--Hb_000020_170 Hb_002783_100 Hb_002783_100 Hb_050898_040--Hb_002783_100 Hb_005295_030 Hb_005295_030 Hb_050898_040--Hb_005295_030 Hb_029883_010--Hb_004686_040 Hb_029883_010--Hb_000020_170 Hb_000005_290 Hb_000005_290 Hb_029883_010--Hb_000005_290 Hb_000134_190 Hb_000134_190 Hb_029883_010--Hb_000134_190 Hb_000109_200 Hb_000109_200 Hb_029883_010--Hb_000109_200 Hb_002067_070 Hb_002067_070 Hb_004162_200--Hb_002067_070 Hb_002311_030 Hb_002311_030 Hb_004162_200--Hb_002311_030 Hb_007113_060 Hb_007113_060 Hb_004162_200--Hb_007113_060 Hb_004162_200--Hb_005295_030 Hb_009151_010 Hb_009151_010 Hb_004162_200--Hb_009151_010 Hb_004686_040--Hb_000134_190 Hb_004686_040--Hb_000020_170 Hb_023582_030 Hb_023582_030 Hb_004686_040--Hb_023582_030 Hb_004686_040--Hb_000109_200 Hb_000742_070 Hb_000742_070 Hb_004686_040--Hb_000742_070 Hb_000020_170--Hb_000109_200 Hb_001568_040 Hb_001568_040 Hb_000020_170--Hb_001568_040 Hb_000020_170--Hb_000134_190 Hb_007317_050 Hb_007317_050 Hb_000020_170--Hb_007317_050 Hb_000317_380 Hb_000317_380 Hb_002783_100--Hb_000317_380 Hb_002783_100--Hb_000005_290 Hb_001975_110 Hb_001975_110 Hb_002783_100--Hb_001975_110 Hb_002309_020 Hb_002309_020 Hb_002783_100--Hb_002309_020 Hb_002783_100--Hb_004162_200 Hb_002092_060 Hb_002092_060 Hb_005295_030--Hb_002092_060 Hb_006977_010 Hb_006977_010 Hb_005295_030--Hb_006977_010 Hb_015175_070 Hb_015175_070 Hb_005295_030--Hb_015175_070 Hb_005295_030--Hb_002309_020 Hb_004899_230 Hb_004899_230 Hb_005295_030--Hb_004899_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.123451 15.0113 46.6366 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.50028 10.9632

CAGE analysis