Hb_000109_200

Information

Type -
Description -
Location Contig109: 276702-276929
Sequence    

Annotation

kegg
ID cit:102615740
description uncharacterized LOC102615740
nr
ID KDO82529.1
description hypothetical protein CISIN_1g037825mg [Citrus sinensis]
swissprot
ID Q9SKX1
description Transcription factor IBH1 OS=Arabidopsis thaliana GN=IBH1 PE=1 SV=1
trembl
ID A0A067GSA5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037825mg PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor par2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000109_200 0.0 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
2 Hb_000020_170 0.0470458882 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
3 Hb_007317_050 0.050232303 - - hypothetical protein POPTR_0009s16550g [Populus trichocarpa]
4 Hb_004686_040 0.061440975 - - hypothetical protein POPTR_0016s05690g [Populus trichocarpa]
5 Hb_031012_030 0.0657904639 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
6 Hb_005353_010 0.0689611876 - - Pectinesterase-1 precursor, putative [Ricinus communis]
7 Hb_000134_190 0.0708561932 - - hypothetical protein JCGZ_16725 [Jatropha curcas]
8 Hb_029883_010 0.075789512 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
9 Hb_004313_010 0.079547413 - - PREDICTED: patatin-like protein 1 [Prunus mume]
10 Hb_186458_010 0.0844562843 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
11 Hb_023582_030 0.0892402349 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_001568_040 0.1005543845 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007477_010 0.1019938315 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA9 [Phoenix dactylifera]
14 Hb_017110_030 0.1041083241 - - PREDICTED: subtilisin-like protease SBT5.4 [Jatropha curcas]
15 Hb_000742_070 0.1081596105 - - PREDICTED: monoglyceride lipase isoform X2 [Bubalus bubalis]
16 Hb_016734_110 0.1090288364 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
17 Hb_000792_100 0.1112034236 - - PREDICTED: uncharacterized protein OsI_027940-like [Jatropha curcas]
18 Hb_000666_040 0.1114744564 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
19 Hb_050898_040 0.1141462294 - - -
20 Hb_083963_010 0.1173870164 - - PREDICTED: probable carboxylesterase 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000109_200 Hb_000109_200 Hb_000020_170 Hb_000020_170 Hb_000109_200--Hb_000020_170 Hb_007317_050 Hb_007317_050 Hb_000109_200--Hb_007317_050 Hb_004686_040 Hb_004686_040 Hb_000109_200--Hb_004686_040 Hb_031012_030 Hb_031012_030 Hb_000109_200--Hb_031012_030 Hb_005353_010 Hb_005353_010 Hb_000109_200--Hb_005353_010 Hb_000134_190 Hb_000134_190 Hb_000109_200--Hb_000134_190 Hb_000020_170--Hb_004686_040 Hb_029883_010 Hb_029883_010 Hb_000020_170--Hb_029883_010 Hb_001568_040 Hb_001568_040 Hb_000020_170--Hb_001568_040 Hb_000020_170--Hb_000134_190 Hb_000020_170--Hb_007317_050 Hb_007317_050--Hb_005353_010 Hb_016734_110 Hb_016734_110 Hb_007317_050--Hb_016734_110 Hb_000666_040 Hb_000666_040 Hb_007317_050--Hb_000666_040 Hb_007317_050--Hb_031012_030 Hb_004686_040--Hb_000134_190 Hb_004686_040--Hb_029883_010 Hb_023582_030 Hb_023582_030 Hb_004686_040--Hb_023582_030 Hb_000742_070 Hb_000742_070 Hb_004686_040--Hb_000742_070 Hb_004313_010 Hb_004313_010 Hb_031012_030--Hb_004313_010 Hb_186458_010 Hb_186458_010 Hb_031012_030--Hb_186458_010 Hb_031012_030--Hb_005353_010 Hb_017110_030 Hb_017110_030 Hb_031012_030--Hb_017110_030 Hb_000676_360 Hb_000676_360 Hb_031012_030--Hb_000676_360 Hb_000792_100 Hb_000792_100 Hb_005353_010--Hb_000792_100 Hb_005353_010--Hb_004313_010 Hb_123713_010 Hb_123713_010 Hb_005353_010--Hb_123713_010 Hb_000134_190--Hb_023582_030 Hb_000134_190--Hb_000742_070 Hb_000134_190--Hb_017110_030 Hb_000134_190--Hb_186458_010 Hb_000933_030 Hb_000933_030 Hb_000134_190--Hb_000933_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 15.8387 31.2342 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 6.02758

CAGE analysis