Hb_004686_040

Information

Type -
Description -
Location Contig4686: 22848-23521
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05690g
description POPTRDRAFT_777199; hypothetical protein
nr
ID XP_002323321.2
description hypothetical protein POPTR_0016s05690g [Populus trichocarpa]
swissprot
ID Q8RWI9
description ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2
trembl
ID B9II86
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05690g PE=3 SV=2
Gene Ontology
ID GO:0016020
description abc transporter g family member 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004686_040 0.0 - - hypothetical protein POPTR_0016s05690g [Populus trichocarpa]
2 Hb_000134_190 0.0328166493 - - hypothetical protein JCGZ_16725 [Jatropha curcas]
3 Hb_000020_170 0.0438388345 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
4 Hb_029883_010 0.0483634797 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
5 Hb_023582_030 0.0524477531 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_000109_200 0.061440975 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
7 Hb_000742_070 0.0736545808 - - PREDICTED: monoglyceride lipase isoform X2 [Bubalus bubalis]
8 Hb_000933_030 0.0790098435 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
9 Hb_050898_040 0.0806583526 - - -
10 Hb_017110_030 0.0840798888 - - PREDICTED: subtilisin-like protease SBT5.4 [Jatropha curcas]
11 Hb_186458_010 0.0871610732 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
12 Hb_001568_040 0.0918518221 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004218_270 0.0952605415 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
14 Hb_000815_050 0.0962539849 - - PREDICTED: expansin-A1 [Populus euphratica]
15 Hb_000049_190 0.1029558215 - - nucleotide binding protein, putative [Ricinus communis]
16 Hb_031012_030 0.1032340896 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
17 Hb_083963_010 0.1036408772 - - PREDICTED: probable carboxylesterase 8 [Jatropha curcas]
18 Hb_007317_050 0.1051770826 - - hypothetical protein POPTR_0009s16550g [Populus trichocarpa]
19 Hb_004162_200 0.1059310772 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
20 Hb_000005_290 0.1064766199 - - Serine carboxypeptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004686_040 Hb_004686_040 Hb_000134_190 Hb_000134_190 Hb_004686_040--Hb_000134_190 Hb_000020_170 Hb_000020_170 Hb_004686_040--Hb_000020_170 Hb_029883_010 Hb_029883_010 Hb_004686_040--Hb_029883_010 Hb_023582_030 Hb_023582_030 Hb_004686_040--Hb_023582_030 Hb_000109_200 Hb_000109_200 Hb_004686_040--Hb_000109_200 Hb_000742_070 Hb_000742_070 Hb_004686_040--Hb_000742_070 Hb_000134_190--Hb_023582_030 Hb_000134_190--Hb_000742_070 Hb_017110_030 Hb_017110_030 Hb_000134_190--Hb_017110_030 Hb_186458_010 Hb_186458_010 Hb_000134_190--Hb_186458_010 Hb_000933_030 Hb_000933_030 Hb_000134_190--Hb_000933_030 Hb_000020_170--Hb_000109_200 Hb_000020_170--Hb_029883_010 Hb_001568_040 Hb_001568_040 Hb_000020_170--Hb_001568_040 Hb_000020_170--Hb_000134_190 Hb_007317_050 Hb_007317_050 Hb_000020_170--Hb_007317_050 Hb_050898_040 Hb_050898_040 Hb_029883_010--Hb_050898_040 Hb_000005_290 Hb_000005_290 Hb_029883_010--Hb_000005_290 Hb_029883_010--Hb_000134_190 Hb_029883_010--Hb_000109_200 Hb_023582_030--Hb_000742_070 Hb_023582_030--Hb_017110_030 Hb_023582_030--Hb_000933_030 Hb_023582_030--Hb_186458_010 Hb_000109_200--Hb_007317_050 Hb_031012_030 Hb_031012_030 Hb_000109_200--Hb_031012_030 Hb_005353_010 Hb_005353_010 Hb_000109_200--Hb_005353_010 Hb_000109_200--Hb_000134_190 Hb_000742_070--Hb_017110_030 Hb_000742_070--Hb_000933_030 Hb_083963_010 Hb_083963_010 Hb_000742_070--Hb_083963_010 Hb_000742_070--Hb_186458_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.52495 3.60873 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.940149

CAGE analysis