Hb_007317_050

Information

Type -
Description -
Location Contig7317: 33317-33637
Sequence    

Annotation

kegg
ID pop:POPTR_0009s16550g
description POPTRDRAFT_556802; hypothetical protein
nr
ID XP_002312818.1
description hypothetical protein POPTR_0009s16550g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9PFK9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s16550g PE=2 SV=1
Gene Ontology
ID GO:0050896
description hypothetical protein POPTR_0009s16550g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007317_050 0.0 - - hypothetical protein POPTR_0009s16550g [Populus trichocarpa]
2 Hb_000109_200 0.050232303 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
3 Hb_005353_010 0.0567968806 - - Pectinesterase-1 precursor, putative [Ricinus communis]
4 Hb_000020_170 0.077756905 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
5 Hb_016734_110 0.0879380843 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
6 Hb_000666_040 0.0886323449 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
7 Hb_031012_030 0.0890271544 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
8 Hb_005666_010 0.0892092155 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
9 Hb_000792_100 0.0947843986 - - PREDICTED: uncharacterized protein OsI_027940-like [Jatropha curcas]
10 Hb_029883_010 0.1000858521 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_007477_010 0.1005012473 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA9 [Phoenix dactylifera]
12 Hb_123713_010 0.1013230102 - - o-methyltransferase, putative [Ricinus communis]
13 Hb_004686_040 0.1051770826 - - hypothetical protein POPTR_0016s05690g [Populus trichocarpa]
14 Hb_000815_010 0.1065294972 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica]
15 Hb_004313_010 0.1067673234 - - PREDICTED: patatin-like protein 1 [Prunus mume]
16 Hb_001568_040 0.1100794722 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001775_140 0.1103547439 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]
18 Hb_105377_010 0.1116877367 - - hypothetical protein PRUPE_ppa001414mg [Prunus persica]
19 Hb_000134_190 0.1175122333 - - hypothetical protein JCGZ_16725 [Jatropha curcas]
20 Hb_000185_180 0.1197761383 - - hypothetical protein CISIN_1g037968mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_007317_050 Hb_007317_050 Hb_000109_200 Hb_000109_200 Hb_007317_050--Hb_000109_200 Hb_005353_010 Hb_005353_010 Hb_007317_050--Hb_005353_010 Hb_000020_170 Hb_000020_170 Hb_007317_050--Hb_000020_170 Hb_016734_110 Hb_016734_110 Hb_007317_050--Hb_016734_110 Hb_000666_040 Hb_000666_040 Hb_007317_050--Hb_000666_040 Hb_031012_030 Hb_031012_030 Hb_007317_050--Hb_031012_030 Hb_000109_200--Hb_000020_170 Hb_004686_040 Hb_004686_040 Hb_000109_200--Hb_004686_040 Hb_000109_200--Hb_031012_030 Hb_000109_200--Hb_005353_010 Hb_000134_190 Hb_000134_190 Hb_000109_200--Hb_000134_190 Hb_005353_010--Hb_031012_030 Hb_000792_100 Hb_000792_100 Hb_005353_010--Hb_000792_100 Hb_004313_010 Hb_004313_010 Hb_005353_010--Hb_004313_010 Hb_123713_010 Hb_123713_010 Hb_005353_010--Hb_123713_010 Hb_000020_170--Hb_004686_040 Hb_029883_010 Hb_029883_010 Hb_000020_170--Hb_029883_010 Hb_001568_040 Hb_001568_040 Hb_000020_170--Hb_001568_040 Hb_000020_170--Hb_000134_190 Hb_002999_020 Hb_002999_020 Hb_016734_110--Hb_002999_020 Hb_016734_110--Hb_000666_040 Hb_016734_110--Hb_001568_040 Hb_000742_040 Hb_000742_040 Hb_016734_110--Hb_000742_040 Hb_153258_030 Hb_153258_030 Hb_016734_110--Hb_153258_030 Hb_001496_150 Hb_001496_150 Hb_016734_110--Hb_001496_150 Hb_009662_040 Hb_009662_040 Hb_000666_040--Hb_009662_040 Hb_001623_560 Hb_001623_560 Hb_000666_040--Hb_001623_560 Hb_000666_040--Hb_002999_020 Hb_001775_140 Hb_001775_140 Hb_000666_040--Hb_001775_140 Hb_031012_030--Hb_004313_010 Hb_186458_010 Hb_186458_010 Hb_031012_030--Hb_186458_010 Hb_017110_030 Hb_017110_030 Hb_031012_030--Hb_017110_030 Hb_000676_360 Hb_000676_360 Hb_031012_030--Hb_000676_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.270625 85.0588 165.447 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 22.4116

CAGE analysis