Hb_000666_040

Information

Type -
Description -
Location Contig666: 30644-37274
Sequence    

Annotation

kegg
ID vvi:100266230
description MLP-like protein 34
nr
ID XP_002284534.2
description PREDICTED: MLP-like protein 34 [Vitis vinifera]
swissprot
ID Q9SSK9
description MLP-like protein 28 OS=Arabidopsis thaliana GN=MLP28 PE=1 SV=1
trembl
ID A0A067KPJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04715 PE=4 SV=1
Gene Ontology
ID GO:0044424
description mlp-like protein 34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53246: 31865-32006 , PASA_asmbl_53247: 32053-32743
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000666_040 0.0 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
2 Hb_009662_040 0.0625318805 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
3 Hb_016734_110 0.0695945911 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
4 Hb_001623_560 0.0768669536 - - late embryogenesis abundant protein group 9 protein [Arachis hypogaea]
5 Hb_007317_050 0.0886323449 - - hypothetical protein POPTR_0009s16550g [Populus trichocarpa]
6 Hb_002999_020 0.0930077958 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
7 Hb_001775_140 0.0949260459 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]
8 Hb_005666_010 0.0964153731 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
9 Hb_000742_040 0.098388967 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
10 Hb_000815_010 0.1025195314 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica]
11 Hb_000020_170 0.1045406387 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
12 Hb_001568_040 0.1080286684 - - conserved hypothetical protein [Ricinus communis]
13 Hb_153258_030 0.1088054239 - - hypothetical protein RCOM_0853150 [Ricinus communis]
14 Hb_000109_200 0.1114744564 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
15 Hb_029883_010 0.1138493599 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
16 Hb_000796_110 0.1138601172 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]
17 Hb_001496_150 0.1142476686 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
18 Hb_000005_290 0.1154770772 - - Serine carboxypeptidase, putative [Ricinus communis]
19 Hb_007477_010 0.1166546117 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA9 [Phoenix dactylifera]
20 Hb_124677_070 0.1176956434 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]

Gene co-expression network

sample Hb_000666_040 Hb_000666_040 Hb_009662_040 Hb_009662_040 Hb_000666_040--Hb_009662_040 Hb_016734_110 Hb_016734_110 Hb_000666_040--Hb_016734_110 Hb_001623_560 Hb_001623_560 Hb_000666_040--Hb_001623_560 Hb_007317_050 Hb_007317_050 Hb_000666_040--Hb_007317_050 Hb_002999_020 Hb_002999_020 Hb_000666_040--Hb_002999_020 Hb_001775_140 Hb_001775_140 Hb_000666_040--Hb_001775_140 Hb_009662_040--Hb_002999_020 Hb_153258_030 Hb_153258_030 Hb_009662_040--Hb_153258_030 Hb_009662_040--Hb_016734_110 Hb_009662_040--Hb_001623_560 Hb_000742_040 Hb_000742_040 Hb_009662_040--Hb_000742_040 Hb_016734_110--Hb_002999_020 Hb_001568_040 Hb_001568_040 Hb_016734_110--Hb_001568_040 Hb_016734_110--Hb_000742_040 Hb_016734_110--Hb_153258_030 Hb_001496_150 Hb_001496_150 Hb_016734_110--Hb_001496_150 Hb_001623_560--Hb_016734_110 Hb_001623_560--Hb_001775_140 Hb_001623_560--Hb_000742_040 Hb_001623_560--Hb_002999_020 Hb_000109_200 Hb_000109_200 Hb_007317_050--Hb_000109_200 Hb_005353_010 Hb_005353_010 Hb_007317_050--Hb_005353_010 Hb_000020_170 Hb_000020_170 Hb_007317_050--Hb_000020_170 Hb_007317_050--Hb_016734_110 Hb_031012_030 Hb_031012_030 Hb_007317_050--Hb_031012_030 Hb_002999_020--Hb_153258_030 Hb_002999_020--Hb_000742_040 Hb_000796_110 Hb_000796_110 Hb_002999_020--Hb_000796_110 Hb_001416_120 Hb_001416_120 Hb_002999_020--Hb_001416_120 Hb_124677_070 Hb_124677_070 Hb_002999_020--Hb_124677_070 Hb_000934_120 Hb_000934_120 Hb_001775_140--Hb_000934_120 Hb_016911_010 Hb_016911_010 Hb_001775_140--Hb_016911_010 Hb_009062_020 Hb_009062_020 Hb_001775_140--Hb_009062_020 Hb_001775_140--Hb_016734_110 Hb_001136_080 Hb_001136_080 Hb_001775_140--Hb_001136_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0244039 0.31021 14.2019 36.0478 0 0.172183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.167923 0 0 0.053216 3.93866

CAGE analysis