Hb_016734_110

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig16734: 86170-86427
Sequence    

Annotation

kegg
ID pop:POPTR_0005s12390g
description hypothetical protein
nr
ID XP_006383186.1
description hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
swissprot
ID Q58FS3
description Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1
trembl
ID B9MXN3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s12390g PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein radialis-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15484: 81958-86495 , PASA_asmbl_15485: 86046-86433 , PASA_asmbl_15486: 86563-86934
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016734_110 0.0 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
2 Hb_002999_020 0.0686781798 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
3 Hb_000666_040 0.0695945911 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
4 Hb_001568_040 0.0698949012 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000742_040 0.0714509867 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
6 Hb_153258_030 0.0752426708 - - hypothetical protein RCOM_0853150 [Ricinus communis]
7 Hb_001496_150 0.0789967205 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
8 Hb_018910_010 0.0805642578 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
9 Hb_001416_120 0.0818326154 - - caspase, putative [Ricinus communis]
10 Hb_000796_110 0.0831104317 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]
11 Hb_124677_070 0.0845515627 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
12 Hb_000049_190 0.084642723 - - nucleotide binding protein, putative [Ricinus communis]
13 Hb_001623_560 0.0868546591 - - late embryogenesis abundant protein group 9 protein [Arachis hypogaea]
14 Hb_001775_140 0.0874054802 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]
15 Hb_007317_050 0.0879380843 - - hypothetical protein POPTR_0009s16550g [Populus trichocarpa]
16 Hb_009662_040 0.0885806499 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
17 Hb_004693_040 0.0902806109 - - -
18 Hb_000020_170 0.0938452093 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
19 Hb_005666_010 0.094943931 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
20 Hb_000815_010 0.0951967627 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica]

Gene co-expression network

sample Hb_016734_110 Hb_016734_110 Hb_002999_020 Hb_002999_020 Hb_016734_110--Hb_002999_020 Hb_000666_040 Hb_000666_040 Hb_016734_110--Hb_000666_040 Hb_001568_040 Hb_001568_040 Hb_016734_110--Hb_001568_040 Hb_000742_040 Hb_000742_040 Hb_016734_110--Hb_000742_040 Hb_153258_030 Hb_153258_030 Hb_016734_110--Hb_153258_030 Hb_001496_150 Hb_001496_150 Hb_016734_110--Hb_001496_150 Hb_002999_020--Hb_153258_030 Hb_002999_020--Hb_000742_040 Hb_000796_110 Hb_000796_110 Hb_002999_020--Hb_000796_110 Hb_001416_120 Hb_001416_120 Hb_002999_020--Hb_001416_120 Hb_124677_070 Hb_124677_070 Hb_002999_020--Hb_124677_070 Hb_009662_040 Hb_009662_040 Hb_000666_040--Hb_009662_040 Hb_001623_560 Hb_001623_560 Hb_000666_040--Hb_001623_560 Hb_007317_050 Hb_007317_050 Hb_000666_040--Hb_007317_050 Hb_000666_040--Hb_002999_020 Hb_001775_140 Hb_001775_140 Hb_000666_040--Hb_001775_140 Hb_000049_190 Hb_000049_190 Hb_001568_040--Hb_000049_190 Hb_018910_010 Hb_018910_010 Hb_001568_040--Hb_018910_010 Hb_005665_100 Hb_005665_100 Hb_001568_040--Hb_005665_100 Hb_000020_170 Hb_000020_170 Hb_001568_040--Hb_000020_170 Hb_004693_040 Hb_004693_040 Hb_001568_040--Hb_004693_040 Hb_005614_060 Hb_005614_060 Hb_001568_040--Hb_005614_060 Hb_000742_040--Hb_124677_070 Hb_000742_040--Hb_000796_110 Hb_000742_040--Hb_153258_030 Hb_000802_040 Hb_000802_040 Hb_000742_040--Hb_000802_040 Hb_153258_030--Hb_000796_110 Hb_090210_010 Hb_090210_010 Hb_153258_030--Hb_090210_010 Hb_153258_030--Hb_001496_150 Hb_153258_030--Hb_001416_120 Hb_000227_290 Hb_000227_290 Hb_001496_150--Hb_000227_290 Hb_001496_150--Hb_018910_010 Hb_001496_150--Hb_000049_190 Hb_001496_150--Hb_005665_100 Hb_001496_150--Hb_001568_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.629374 31.6741 95.7331 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 10.0461

CAGE analysis