Hb_018910_010

Information

Type -
Description -
Location Contig18910: 470-885
Sequence    

Annotation

kegg
ID cic:CICLE_v10030320mg
description hypothetical protein
nr
ID XP_006481476.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
swissprot
ID A2AL36
description Centriolin OS=Mus musculus GN=Cntrl PE=2 SV=2
trembl
ID V4RS80
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10030320mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018910_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
2 Hb_000049_190 0.0253525038 - - nucleotide binding protein, putative [Ricinus communis]
3 Hb_004693_040 0.0320742865 - - -
4 Hb_001568_040 0.0364657858 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005665_100 0.0377139898 - - PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]
6 Hb_002308_040 0.051234598 - - methyladenine glycosylase family protein [Populus trichocarpa]
7 Hb_002471_310 0.0561144322 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
8 Hb_005614_060 0.0678626236 - - Uncharacterized protein TCM_019750 [Theobroma cacao]
9 Hb_001496_150 0.0686002441 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
10 Hb_000664_010 0.0688806098 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
11 Hb_001357_110 0.0786499586 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
12 Hb_016734_110 0.0805642578 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
13 Hb_029584_030 0.0826627836 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
14 Hb_024066_020 0.0827811756 - - P66 protein [Hevea brasiliensis]
15 Hb_000227_290 0.0861576655 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
16 Hb_007007_140 0.086853342 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
17 Hb_153258_030 0.0882790214 - - hypothetical protein RCOM_0853150 [Ricinus communis]
18 Hb_004440_030 0.0891209031 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
19 Hb_011224_030 0.0921048237 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
20 Hb_000802_040 0.0923501848 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]

Gene co-expression network

sample Hb_018910_010 Hb_018910_010 Hb_000049_190 Hb_000049_190 Hb_018910_010--Hb_000049_190 Hb_004693_040 Hb_004693_040 Hb_018910_010--Hb_004693_040 Hb_001568_040 Hb_001568_040 Hb_018910_010--Hb_001568_040 Hb_005665_100 Hb_005665_100 Hb_018910_010--Hb_005665_100 Hb_002308_040 Hb_002308_040 Hb_018910_010--Hb_002308_040 Hb_002471_310 Hb_002471_310 Hb_018910_010--Hb_002471_310 Hb_000049_190--Hb_001568_040 Hb_000049_190--Hb_005665_100 Hb_005614_060 Hb_005614_060 Hb_000049_190--Hb_005614_060 Hb_000049_190--Hb_004693_040 Hb_000049_190--Hb_002308_040 Hb_004693_040--Hb_002308_040 Hb_004693_040--Hb_002471_310 Hb_004693_040--Hb_005665_100 Hb_024066_020 Hb_024066_020 Hb_004693_040--Hb_024066_020 Hb_001568_040--Hb_005665_100 Hb_000020_170 Hb_000020_170 Hb_001568_040--Hb_000020_170 Hb_001568_040--Hb_004693_040 Hb_001568_040--Hb_005614_060 Hb_000664_010 Hb_000664_010 Hb_005665_100--Hb_000664_010 Hb_005665_100--Hb_005614_060 Hb_005665_100--Hb_002471_310 Hb_005665_100--Hb_002308_040 Hb_002308_040--Hb_002471_310 Hb_002308_040--Hb_000664_010 Hb_007007_140 Hb_007007_140 Hb_002308_040--Hb_007007_140 Hb_002471_310--Hb_000664_010 Hb_029584_030 Hb_029584_030 Hb_002471_310--Hb_029584_030 Hb_002471_310--Hb_024066_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.855914 3.62244 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.464353

CAGE analysis