Hb_007007_140

Information

Type transcription factor
Description TF Family: MIKC
Location Contig7007: 129408-134260
Sequence    

Annotation

kegg
ID rcu:RCOM_1612950
description mads box protein, putative (EC:1.3.1.74)
nr
ID XP_012083518.1
description PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
swissprot
ID Q6EU39
description MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1
trembl
ID E6NU25
description JHL05D22.6 protein OS=Jatropha curcas GN=JHL05D22.6 PE=4 SV=1
Gene Ontology
ID GO:0005634
description agamous-like mads-box protein agl6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54850: 129719-130943
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007007_140 0.0 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
2 Hb_024066_020 0.0216658177 - - P66 protein [Hevea brasiliensis]
3 Hb_004396_020 0.0269028955 - - SAUR-like auxin-responsive protein family [Theobroma cacao]
4 Hb_004732_080 0.0465453434 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
5 Hb_002308_040 0.0518860498 - - methyladenine glycosylase family protein [Populus trichocarpa]
6 Hb_150179_010 0.0576431303 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
7 Hb_002471_310 0.0593297759 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
8 Hb_004693_040 0.0595201895 - - -
9 Hb_011224_030 0.0630695319 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
10 Hb_010327_040 0.0658022553 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
11 Hb_000731_180 0.0674176433 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
12 Hb_003685_070 0.0704945281 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
13 Hb_001557_030 0.0706370817 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
14 Hb_000331_380 0.071425184 - - hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
15 Hb_000664_010 0.0753702967 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
16 Hb_000352_210 0.0765057289 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
17 Hb_000392_080 0.0816561698 - - hypothetical protein glysoja_034865 [Glycine soja]
18 Hb_029584_030 0.081837941 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
19 Hb_005665_100 0.0832300994 - - PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]
20 Hb_002073_210 0.0853735729 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007007_140 Hb_007007_140 Hb_024066_020 Hb_024066_020 Hb_007007_140--Hb_024066_020 Hb_004396_020 Hb_004396_020 Hb_007007_140--Hb_004396_020 Hb_004732_080 Hb_004732_080 Hb_007007_140--Hb_004732_080 Hb_002308_040 Hb_002308_040 Hb_007007_140--Hb_002308_040 Hb_150179_010 Hb_150179_010 Hb_007007_140--Hb_150179_010 Hb_002471_310 Hb_002471_310 Hb_007007_140--Hb_002471_310 Hb_024066_020--Hb_004396_020 Hb_024066_020--Hb_004732_080 Hb_024066_020--Hb_002308_040 Hb_004693_040 Hb_004693_040 Hb_024066_020--Hb_004693_040 Hb_024066_020--Hb_002471_310 Hb_004396_020--Hb_004732_080 Hb_010327_040 Hb_010327_040 Hb_004396_020--Hb_010327_040 Hb_000392_080 Hb_000392_080 Hb_004396_020--Hb_000392_080 Hb_000331_380 Hb_000331_380 Hb_004396_020--Hb_000331_380 Hb_000731_180 Hb_000731_180 Hb_004732_080--Hb_000731_180 Hb_011224_030 Hb_011224_030 Hb_004732_080--Hb_011224_030 Hb_004732_080--Hb_002308_040 Hb_002308_040--Hb_002471_310 Hb_002308_040--Hb_004693_040 Hb_005665_100 Hb_005665_100 Hb_002308_040--Hb_005665_100 Hb_000664_010 Hb_000664_010 Hb_002308_040--Hb_000664_010 Hb_018910_010 Hb_018910_010 Hb_002308_040--Hb_018910_010 Hb_150179_010--Hb_011224_030 Hb_001557_030 Hb_001557_030 Hb_150179_010--Hb_001557_030 Hb_029584_030 Hb_029584_030 Hb_150179_010--Hb_029584_030 Hb_150179_010--Hb_000664_010 Hb_003685_070 Hb_003685_070 Hb_150179_010--Hb_003685_070 Hb_002471_310--Hb_005665_100 Hb_002471_310--Hb_000664_010 Hb_002471_310--Hb_004693_040 Hb_002471_310--Hb_029584_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.202672 1.44985 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.120766

CAGE analysis