Hb_004732_080

Information

Type -
Description -
Location Contig4732: 87086-87691
Sequence    

Annotation

kegg
ID rcu:RCOM_0888490
description Rhicadhesin receptor precursor, putative (EC:1.15.1.1)
nr
ID XP_011032864.1
description PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
swissprot
ID Q9SR72
description Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1
trembl
ID B9S5A9
description Rhicadhesin receptor, putative OS=Ricinus communis GN=RCOM_0888490 PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein subfamily 3 member 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004732_080 0.0 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
2 Hb_000731_180 0.0317949351 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
3 Hb_007007_140 0.0465453434 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
4 Hb_004396_020 0.0489789782 - - SAUR-like auxin-responsive protein family [Theobroma cacao]
5 Hb_024066_020 0.0501647154 - - P66 protein [Hevea brasiliensis]
6 Hb_011224_030 0.064211608 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
7 Hb_002308_040 0.0679234663 - - methyladenine glycosylase family protein [Populus trichocarpa]
8 Hb_000352_210 0.0700984322 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
9 Hb_002073_210 0.072491841 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001557_030 0.0752695535 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
11 Hb_002471_310 0.0758049679 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
12 Hb_003152_010 0.0770672915 - - -
13 Hb_010327_040 0.077447401 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
14 Hb_150179_010 0.0776431815 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
15 Hb_000331_380 0.0781928001 - - hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
16 Hb_004693_040 0.0805346192 - - -
17 Hb_003685_070 0.0805991349 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
18 Hb_090210_010 0.081678983 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
19 Hb_014834_100 0.0851746206 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
20 Hb_000392_080 0.0856519187 - - hypothetical protein glysoja_034865 [Glycine soja]

Gene co-expression network

sample Hb_004732_080 Hb_004732_080 Hb_000731_180 Hb_000731_180 Hb_004732_080--Hb_000731_180 Hb_007007_140 Hb_007007_140 Hb_004732_080--Hb_007007_140 Hb_004396_020 Hb_004396_020 Hb_004732_080--Hb_004396_020 Hb_024066_020 Hb_024066_020 Hb_004732_080--Hb_024066_020 Hb_011224_030 Hb_011224_030 Hb_004732_080--Hb_011224_030 Hb_002308_040 Hb_002308_040 Hb_004732_080--Hb_002308_040 Hb_090210_010 Hb_090210_010 Hb_000731_180--Hb_090210_010 Hb_000731_180--Hb_011224_030 Hb_000731_180--Hb_007007_140 Hb_000731_180--Hb_024066_020 Hb_000731_180--Hb_002308_040 Hb_007007_140--Hb_024066_020 Hb_007007_140--Hb_004396_020 Hb_007007_140--Hb_002308_040 Hb_150179_010 Hb_150179_010 Hb_007007_140--Hb_150179_010 Hb_002471_310 Hb_002471_310 Hb_007007_140--Hb_002471_310 Hb_004396_020--Hb_024066_020 Hb_010327_040 Hb_010327_040 Hb_004396_020--Hb_010327_040 Hb_000392_080 Hb_000392_080 Hb_004396_020--Hb_000392_080 Hb_000331_380 Hb_000331_380 Hb_004396_020--Hb_000331_380 Hb_024066_020--Hb_002308_040 Hb_004693_040 Hb_004693_040 Hb_024066_020--Hb_004693_040 Hb_024066_020--Hb_002471_310 Hb_011224_030--Hb_150179_010 Hb_000664_010 Hb_000664_010 Hb_011224_030--Hb_000664_010 Hb_029584_030 Hb_029584_030 Hb_011224_030--Hb_029584_030 Hb_011224_030--Hb_002471_310 Hb_011224_030--Hb_002308_040 Hb_011224_030--Hb_007007_140 Hb_002308_040--Hb_002471_310 Hb_002308_040--Hb_004693_040 Hb_005665_100 Hb_005665_100 Hb_002308_040--Hb_005665_100 Hb_002308_040--Hb_000664_010 Hb_018910_010 Hb_018910_010 Hb_002308_040--Hb_018910_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0876842 3.20677 23.7429 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0320491 1.81881

CAGE analysis