Hb_024066_020

Information

Type -
Description -
Location Contig24066: 23867-26966
Sequence    

Annotation

kegg
ID pop:POPTR_0005s06090g
description hypothetical protein
nr
ID AAO49267.1
description P66 protein [Hevea brasiliensis]
swissprot
ID Q5Z9Z0
description Beta-glucosidase 24 OS=Oryza sativa subsp. japonica GN=BGLU24 PE=2 SV=1
trembl
ID Q84L69
description P66 protein OS=Hevea brasiliensis GN=P66 PE=2 SV=1
Gene Ontology
ID GO:0043231
description beta-glucosidase 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25214: 23673-26998
cDNA
(Sanger)
(ID:Location)		 009_I11.ab1: 25287-26999 , 015_P24.ab1: 25295-26998 , 016_L22.ab1: 25304-26998 , 022_P18.ab1: 25305-26998 , 033_K15.ab1: 25319-26998 , 036_A05.ab1: 25304-26998 , 036_C13.ab1: 25296-26998

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024066_020 0.0 - - P66 protein [Hevea brasiliensis]
2 Hb_007007_140 0.0216658177 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
3 Hb_004396_020 0.0326503134 - - SAUR-like auxin-responsive protein family [Theobroma cacao]
4 Hb_004732_080 0.0501647154 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
5 Hb_002308_040 0.0531518698 - - methyladenine glycosylase family protein [Populus trichocarpa]
6 Hb_004693_040 0.0547614885 - - -
7 Hb_002471_310 0.0559855084 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
8 Hb_010327_040 0.0593423263 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
9 Hb_000731_180 0.0683031838 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
10 Hb_150179_010 0.0694780112 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
11 Hb_011224_030 0.0703263845 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
12 Hb_003685_070 0.0725493095 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
13 Hb_000802_040 0.0798621221 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
14 Hb_000352_210 0.0805535283 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
15 Hb_000664_010 0.0805590028 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
16 Hb_000331_380 0.0806951685 - - hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
17 Hb_000392_080 0.0809611501 - - hypothetical protein glysoja_034865 [Glycine soja]
18 Hb_001557_030 0.0816772883 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
19 Hb_018910_010 0.0827811756 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
20 Hb_005665_100 0.083716842 - - PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]

Gene co-expression network

sample Hb_024066_020 Hb_024066_020 Hb_007007_140 Hb_007007_140 Hb_024066_020--Hb_007007_140 Hb_004396_020 Hb_004396_020 Hb_024066_020--Hb_004396_020 Hb_004732_080 Hb_004732_080 Hb_024066_020--Hb_004732_080 Hb_002308_040 Hb_002308_040 Hb_024066_020--Hb_002308_040 Hb_004693_040 Hb_004693_040 Hb_024066_020--Hb_004693_040 Hb_002471_310 Hb_002471_310 Hb_024066_020--Hb_002471_310 Hb_007007_140--Hb_004396_020 Hb_007007_140--Hb_004732_080 Hb_007007_140--Hb_002308_040 Hb_150179_010 Hb_150179_010 Hb_007007_140--Hb_150179_010 Hb_007007_140--Hb_002471_310 Hb_004396_020--Hb_004732_080 Hb_010327_040 Hb_010327_040 Hb_004396_020--Hb_010327_040 Hb_000392_080 Hb_000392_080 Hb_004396_020--Hb_000392_080 Hb_000331_380 Hb_000331_380 Hb_004396_020--Hb_000331_380 Hb_000731_180 Hb_000731_180 Hb_004732_080--Hb_000731_180 Hb_011224_030 Hb_011224_030 Hb_004732_080--Hb_011224_030 Hb_004732_080--Hb_002308_040 Hb_002308_040--Hb_002471_310 Hb_002308_040--Hb_004693_040 Hb_005665_100 Hb_005665_100 Hb_002308_040--Hb_005665_100 Hb_000664_010 Hb_000664_010 Hb_002308_040--Hb_000664_010 Hb_018910_010 Hb_018910_010 Hb_002308_040--Hb_018910_010 Hb_004693_040--Hb_018910_010 Hb_004693_040--Hb_002471_310 Hb_004693_040--Hb_005665_100 Hb_000049_190 Hb_000049_190 Hb_004693_040--Hb_000049_190 Hb_002471_310--Hb_005665_100 Hb_002471_310--Hb_000664_010 Hb_029584_030 Hb_029584_030 Hb_002471_310--Hb_029584_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.186469 0.113201 455.445 3027 0 1.5325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.755262 0.00887658 243.863

CAGE analysis