Hb_011224_030

Information

Type -
Description -
Location Contig11224: 18753-21619
Sequence    

Annotation

kegg
ID rcu:RCOM_0523130
description Oligopeptide transporter, putative
nr
ID XP_012071038.1
description PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FG72
description Oligopeptide transporter 1 OS=Arabidopsis thaliana GN=OPT1 PE=2 SV=1
trembl
ID A0A067KSW7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01053 PE=4 SV=1
Gene Ontology
ID GO:0055085
description oligopeptide transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03683: 18585-21880 , PASA_asmbl_03684: 18750-19775
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011224_030 0.0 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
2 Hb_150179_010 0.04190314 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
3 Hb_000664_010 0.0485070048 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
4 Hb_029584_030 0.0487057357 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
5 Hb_002471_310 0.0604699682 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
6 Hb_002308_040 0.060557525 - - methyladenine glycosylase family protein [Populus trichocarpa]
7 Hb_007007_140 0.0630695319 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
8 Hb_004732_080 0.064211608 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
9 Hb_001557_030 0.064891655 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
10 Hb_003685_070 0.0657066938 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
11 Hb_014834_100 0.0659186383 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
12 Hb_000731_180 0.0660982976 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
13 Hb_000227_290 0.0663733825 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
14 Hb_005665_100 0.0692438428 - - PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]
15 Hb_024066_020 0.0703263845 - - P66 protein [Hevea brasiliensis]
16 Hb_004693_040 0.0827088093 - - -
17 Hb_002073_210 0.0831486724 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004396_020 0.0853006751 - - SAUR-like auxin-responsive protein family [Theobroma cacao]
19 Hb_001357_110 0.0864568294 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
20 Hb_004957_010 0.0897489793 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]

Gene co-expression network

sample Hb_011224_030 Hb_011224_030 Hb_150179_010 Hb_150179_010 Hb_011224_030--Hb_150179_010 Hb_000664_010 Hb_000664_010 Hb_011224_030--Hb_000664_010 Hb_029584_030 Hb_029584_030 Hb_011224_030--Hb_029584_030 Hb_002471_310 Hb_002471_310 Hb_011224_030--Hb_002471_310 Hb_002308_040 Hb_002308_040 Hb_011224_030--Hb_002308_040 Hb_007007_140 Hb_007007_140 Hb_011224_030--Hb_007007_140 Hb_001557_030 Hb_001557_030 Hb_150179_010--Hb_001557_030 Hb_150179_010--Hb_029584_030 Hb_150179_010--Hb_000664_010 Hb_150179_010--Hb_007007_140 Hb_003685_070 Hb_003685_070 Hb_150179_010--Hb_003685_070 Hb_000664_010--Hb_029584_030 Hb_005665_100 Hb_005665_100 Hb_000664_010--Hb_005665_100 Hb_000664_010--Hb_002471_310 Hb_000664_010--Hb_002308_040 Hb_029584_030--Hb_005665_100 Hb_029584_030--Hb_002471_310 Hb_000227_290 Hb_000227_290 Hb_029584_030--Hb_000227_290 Hb_002471_310--Hb_002308_040 Hb_002471_310--Hb_005665_100 Hb_004693_040 Hb_004693_040 Hb_002471_310--Hb_004693_040 Hb_024066_020 Hb_024066_020 Hb_002471_310--Hb_024066_020 Hb_002308_040--Hb_004693_040 Hb_002308_040--Hb_005665_100 Hb_018910_010 Hb_018910_010 Hb_002308_040--Hb_018910_010 Hb_002308_040--Hb_007007_140 Hb_007007_140--Hb_024066_020 Hb_004396_020 Hb_004396_020 Hb_007007_140--Hb_004396_020 Hb_004732_080 Hb_004732_080 Hb_007007_140--Hb_004732_080 Hb_007007_140--Hb_002471_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0257545 1.04476 7.94853 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.01779

CAGE analysis