Hb_002308_040

Information

Type -
Description -
Location Contig2308: 118404-120250
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18270g
description POPTRDRAFT_226650; methyladenine glycosylase family protein
nr
ID XP_002315089.2
description methyladenine glycosylase family protein [Populus trichocarpa]
swissprot
ID P05100
description DNA-3-methyladenine glycosylase 1 OS=Escherichia coli (strain K12) GN=tag PE=1 SV=1
trembl
ID B9HYD2
description Methyladenine glycosylase family protein OS=Populus trichocarpa GN=POPTR_0010s18270g PE=4 SV=2
Gene Ontology
ID GO:0008725
description methyladenine glycosylase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24268: 118708-120344
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002308_040 0.0 - - methyladenine glycosylase family protein [Populus trichocarpa]
2 Hb_002471_310 0.0251175606 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
3 Hb_004693_040 0.0396342021 - - -
4 Hb_005665_100 0.0442064589 - - PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]
5 Hb_000664_010 0.0486145008 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
6 Hb_018910_010 0.051234598 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
7 Hb_007007_140 0.0518860498 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
8 Hb_024066_020 0.0531518698 - - P66 protein [Hevea brasiliensis]
9 Hb_001357_110 0.0584054377 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
10 Hb_029584_030 0.0596130504 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
11 Hb_011224_030 0.060557525 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
12 Hb_150179_010 0.0670043482 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
13 Hb_004732_080 0.0679234663 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
14 Hb_000049_190 0.0679402349 - - nucleotide binding protein, putative [Ricinus communis]
15 Hb_000731_180 0.0702038227 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
16 Hb_000227_290 0.0719536185 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
17 Hb_004396_020 0.0744492622 - - SAUR-like auxin-responsive protein family [Theobroma cacao]
18 Hb_001557_030 0.0774606196 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
19 Hb_001496_150 0.0774688459 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
20 Hb_003685_070 0.0807719098 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]

Gene co-expression network

sample Hb_002308_040 Hb_002308_040 Hb_002471_310 Hb_002471_310 Hb_002308_040--Hb_002471_310 Hb_004693_040 Hb_004693_040 Hb_002308_040--Hb_004693_040 Hb_005665_100 Hb_005665_100 Hb_002308_040--Hb_005665_100 Hb_000664_010 Hb_000664_010 Hb_002308_040--Hb_000664_010 Hb_018910_010 Hb_018910_010 Hb_002308_040--Hb_018910_010 Hb_007007_140 Hb_007007_140 Hb_002308_040--Hb_007007_140 Hb_002471_310--Hb_005665_100 Hb_002471_310--Hb_000664_010 Hb_002471_310--Hb_004693_040 Hb_029584_030 Hb_029584_030 Hb_002471_310--Hb_029584_030 Hb_024066_020 Hb_024066_020 Hb_002471_310--Hb_024066_020 Hb_004693_040--Hb_018910_010 Hb_004693_040--Hb_005665_100 Hb_004693_040--Hb_024066_020 Hb_000049_190 Hb_000049_190 Hb_004693_040--Hb_000049_190 Hb_005665_100--Hb_000664_010 Hb_005665_100--Hb_018910_010 Hb_005665_100--Hb_000049_190 Hb_005614_060 Hb_005614_060 Hb_005665_100--Hb_005614_060 Hb_000664_010--Hb_029584_030 Hb_011224_030 Hb_011224_030 Hb_000664_010--Hb_011224_030 Hb_150179_010 Hb_150179_010 Hb_000664_010--Hb_150179_010 Hb_018910_010--Hb_000049_190 Hb_001568_040 Hb_001568_040 Hb_018910_010--Hb_001568_040 Hb_018910_010--Hb_002471_310 Hb_007007_140--Hb_024066_020 Hb_004396_020 Hb_004396_020 Hb_007007_140--Hb_004396_020 Hb_004732_080 Hb_004732_080 Hb_007007_140--Hb_004732_080 Hb_007007_140--Hb_150179_010 Hb_007007_140--Hb_002471_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.52248 8.6839 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0121217 1.00518

CAGE analysis