Hb_004396_020

Information

Type -
Description -
Location Contig4396: 35538-40707
Sequence    

Annotation

kegg
ID fve:101295922
description uncharacterized protein LOC101295922
nr
ID XP_007041982.1
description SAUR-like auxin-responsive protein family [Theobroma cacao]
swissprot
ID P33083
description Auxin-induced protein 6B OS=Glycine max PE=2 SV=1
trembl
ID A0A061E6C6
description SAUR-like auxin-responsive protein family OS=Theobroma cacao GN=TCM_006746 PE=4 SV=1
Gene Ontology
ID GO:0009733
description saur-like auxin-responsive protein family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42599: 37223-37718
cDNA
(Sanger)
(ID:Location)		 018_A16.ab1: 37226-37716 , 042_I07.ab1: 37223-37713

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004396_020 0.0 - - SAUR-like auxin-responsive protein family [Theobroma cacao]
2 Hb_007007_140 0.0269028955 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
3 Hb_024066_020 0.0326503134 - - P66 protein [Hevea brasiliensis]
4 Hb_004732_080 0.0489789782 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
5 Hb_010327_040 0.052648443 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
6 Hb_000392_080 0.0557758848 - - hypothetical protein glysoja_034865 [Glycine soja]
7 Hb_000331_380 0.0577715209 - - hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
8 Hb_000352_210 0.0600649364 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
9 Hb_002308_040 0.0744492622 - - methyladenine glycosylase family protein [Populus trichocarpa]
10 Hb_000731_180 0.0744786185 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
11 Hb_004693_040 0.0755386973 - - -
12 Hb_150179_010 0.0793106383 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
13 Hb_002471_310 0.0821497484 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
14 Hb_002073_210 0.0848678593 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003685_070 0.0849338714 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
16 Hb_000802_040 0.0852944454 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
17 Hb_011224_030 0.0853006751 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
18 Hb_001557_030 0.0853782151 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
19 Hb_003152_010 0.0974760819 - - -
20 Hb_001887_010 0.0983867718 - - mta/sah nucleosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004396_020 Hb_004396_020 Hb_007007_140 Hb_007007_140 Hb_004396_020--Hb_007007_140 Hb_024066_020 Hb_024066_020 Hb_004396_020--Hb_024066_020 Hb_004732_080 Hb_004732_080 Hb_004396_020--Hb_004732_080 Hb_010327_040 Hb_010327_040 Hb_004396_020--Hb_010327_040 Hb_000392_080 Hb_000392_080 Hb_004396_020--Hb_000392_080 Hb_000331_380 Hb_000331_380 Hb_004396_020--Hb_000331_380 Hb_007007_140--Hb_024066_020 Hb_007007_140--Hb_004732_080 Hb_002308_040 Hb_002308_040 Hb_007007_140--Hb_002308_040 Hb_150179_010 Hb_150179_010 Hb_007007_140--Hb_150179_010 Hb_002471_310 Hb_002471_310 Hb_007007_140--Hb_002471_310 Hb_024066_020--Hb_004732_080 Hb_024066_020--Hb_002308_040 Hb_004693_040 Hb_004693_040 Hb_024066_020--Hb_004693_040 Hb_024066_020--Hb_002471_310 Hb_000731_180 Hb_000731_180 Hb_004732_080--Hb_000731_180 Hb_011224_030 Hb_011224_030 Hb_004732_080--Hb_011224_030 Hb_004732_080--Hb_002308_040 Hb_000802_040 Hb_000802_040 Hb_010327_040--Hb_000802_040 Hb_010327_040--Hb_024066_020 Hb_010327_040--Hb_007007_140 Hb_010327_040--Hb_004693_040 Hb_010327_040--Hb_000392_080 Hb_000352_210 Hb_000352_210 Hb_000392_080--Hb_000352_210 Hb_000392_080--Hb_000331_380 Hb_002757_020 Hb_002757_020 Hb_000392_080--Hb_002757_020 Hb_000392_080--Hb_024066_020 Hb_000331_380--Hb_000352_210 Hb_000431_050 Hb_000431_050 Hb_000331_380--Hb_000431_050 Hb_002073_210 Hb_002073_210 Hb_000331_380--Hb_002073_210 Hb_000331_380--Hb_007007_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.854804 6.36975 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.406815

CAGE analysis