Hb_000352_210

Information

Type -
Description -
Location Contig352: 201497-203000
Sequence    

Annotation

kegg
ID cic:CICLE_v10016123mg
description hypothetical protein
nr
ID XP_012067410.1
description PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
swissprot
ID Q41638
description Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1
trembl
ID A0A067LCR8
description Xyloglucan endotransglucosylase/hydrolase OS=Jatropha curcas GN=JCGZ_26912 PE=3 SV=1
Gene Ontology
ID GO:0005618
description exgt1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36583: 201492-203001
cDNA
(Sanger)
(ID:Location)		 017_G02.ab1: 201492-202506

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_210 0.0 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
2 Hb_000331_380 0.0357436842 - - hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
3 Hb_000392_080 0.0518132612 - - hypothetical protein glysoja_034865 [Glycine soja]
4 Hb_000431_050 0.0592784675 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004396_020 0.0600649364 - - SAUR-like auxin-responsive protein family [Theobroma cacao]
6 Hb_002073_210 0.0675087105 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003152_010 0.0689197361 - - -
8 Hb_004732_080 0.0700984322 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
9 Hb_015183_090 0.0735544881 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
10 Hb_007007_140 0.0765057289 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
11 Hb_151436_010 0.078243256 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
12 Hb_024066_020 0.0805535283 - - P66 protein [Hevea brasiliensis]
13 Hb_006970_180 0.0807378312 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
14 Hb_085158_010 0.0835635982 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
15 Hb_001557_030 0.0912413028 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
16 Hb_000731_180 0.0972238318 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
17 Hb_001887_010 0.097264485 - - mta/sah nucleosidase, putative [Ricinus communis]
18 Hb_010327_040 0.0981719832 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
19 Hb_002757_020 0.0989592353 - - -
20 Hb_004162_150 0.0997856294 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]

Gene co-expression network

sample Hb_000352_210 Hb_000352_210 Hb_000331_380 Hb_000331_380 Hb_000352_210--Hb_000331_380 Hb_000392_080 Hb_000392_080 Hb_000352_210--Hb_000392_080 Hb_000431_050 Hb_000431_050 Hb_000352_210--Hb_000431_050 Hb_004396_020 Hb_004396_020 Hb_000352_210--Hb_004396_020 Hb_002073_210 Hb_002073_210 Hb_000352_210--Hb_002073_210 Hb_003152_010 Hb_003152_010 Hb_000352_210--Hb_003152_010 Hb_000331_380--Hb_000431_050 Hb_000331_380--Hb_002073_210 Hb_000331_380--Hb_004396_020 Hb_000331_380--Hb_000392_080 Hb_007007_140 Hb_007007_140 Hb_000331_380--Hb_007007_140 Hb_000392_080--Hb_004396_020 Hb_010327_040 Hb_010327_040 Hb_000392_080--Hb_010327_040 Hb_002757_020 Hb_002757_020 Hb_000392_080--Hb_002757_020 Hb_024066_020 Hb_024066_020 Hb_000392_080--Hb_024066_020 Hb_085158_010 Hb_085158_010 Hb_000431_050--Hb_085158_010 Hb_151436_010 Hb_151436_010 Hb_000431_050--Hb_151436_010 Hb_006970_180 Hb_006970_180 Hb_000431_050--Hb_006970_180 Hb_000431_050--Hb_002073_210 Hb_004396_020--Hb_007007_140 Hb_004396_020--Hb_024066_020 Hb_004732_080 Hb_004732_080 Hb_004396_020--Hb_004732_080 Hb_004396_020--Hb_010327_040 Hb_002073_210--Hb_151436_010 Hb_002073_210--Hb_006970_180 Hb_022250_140 Hb_022250_140 Hb_002073_210--Hb_022250_140 Hb_006889_010 Hb_006889_010 Hb_003152_010--Hb_006889_010 Hb_003152_010--Hb_006970_180 Hb_003152_010--Hb_002073_210 Hb_003152_010--Hb_151436_010 Hb_003152_010--Hb_000431_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.220277 43.6827 474.115 0.016758 0.187899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.122567 0.12855 0 0.450637 23.4704

CAGE analysis