Hb_022250_140

Information

Type -
Description -
Location Contig22250: 97973-98725
Sequence    

Annotation

kegg
ID rcu:RCOM_1503010
description Rhicadhesin receptor precursor, putative (EC:1.15.1.1)
nr
ID XP_002511061.1
description Rhicadhesin receptor precursor, putative [Ricinus communis]
swissprot
ID Q9FLT3
description Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1
trembl
ID B9RA36
description Rhicadhesin receptor, putative OS=Ricinus communis GN=RCOM_1503010 PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein subfamily 3 member 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022250_140 0.0 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
2 Hb_006570_170 0.0514175108 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
3 Hb_006970_180 0.0543142749 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
4 Hb_006816_060 0.0577073752 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
5 Hb_001634_050 0.0601073918 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
6 Hb_151436_010 0.0636986638 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
7 Hb_002073_210 0.0639348542 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001433_230 0.0642136699 - - PREDICTED: kinesin-4-like [Jatropha curcas]
9 Hb_005396_020 0.067772759 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
10 Hb_009158_010 0.0717187648 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
11 Hb_000816_090 0.0764944677 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
12 Hb_006249_010 0.0787104064 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
13 Hb_000521_060 0.0795548482 - - PREDICTED: protein YLS3-like [Jatropha curcas]
14 Hb_025557_090 0.0796811236 - - hypothetical protein glysoja_034865 [Glycine soja]
15 Hb_003060_020 0.0798602154 - - serine carboxypeptidase, putative [Ricinus communis]
16 Hb_000318_500 0.0831425364 - - conserved hypothetical protein [Ricinus communis]
17 Hb_014834_100 0.0841630964 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
18 Hb_118934_010 0.0865434905 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
19 Hb_006889_010 0.0897402792 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
20 Hb_003152_010 0.0919495572 - - -

Gene co-expression network

sample Hb_022250_140 Hb_022250_140 Hb_006570_170 Hb_006570_170 Hb_022250_140--Hb_006570_170 Hb_006970_180 Hb_006970_180 Hb_022250_140--Hb_006970_180 Hb_006816_060 Hb_006816_060 Hb_022250_140--Hb_006816_060 Hb_001634_050 Hb_001634_050 Hb_022250_140--Hb_001634_050 Hb_151436_010 Hb_151436_010 Hb_022250_140--Hb_151436_010 Hb_002073_210 Hb_002073_210 Hb_022250_140--Hb_002073_210 Hb_006570_170--Hb_001634_050 Hb_000816_090 Hb_000816_090 Hb_006570_170--Hb_000816_090 Hb_005396_020 Hb_005396_020 Hb_006570_170--Hb_005396_020 Hb_006249_010 Hb_006249_010 Hb_006570_170--Hb_006249_010 Hb_012180_070 Hb_012180_070 Hb_006570_170--Hb_012180_070 Hb_006970_180--Hb_151436_010 Hb_085158_010 Hb_085158_010 Hb_006970_180--Hb_085158_010 Hb_000431_050 Hb_000431_050 Hb_006970_180--Hb_000431_050 Hb_006603_010 Hb_006603_010 Hb_006970_180--Hb_006603_010 Hb_006970_180--Hb_002073_210 Hb_000521_060 Hb_000521_060 Hb_006816_060--Hb_000521_060 Hb_001433_230 Hb_001433_230 Hb_006816_060--Hb_001433_230 Hb_006816_060--Hb_005396_020 Hb_006816_060--Hb_006570_170 Hb_006816_060--Hb_001634_050 Hb_001634_050--Hb_005396_020 Hb_001634_050--Hb_012180_070 Hb_000107_240 Hb_000107_240 Hb_001634_050--Hb_000107_240 Hb_001634_050--Hb_006249_010 Hb_151436_010--Hb_000431_050 Hb_151436_010--Hb_085158_010 Hb_151436_010--Hb_002073_210 Hb_151436_010--Hb_006603_010 Hb_000331_380 Hb_000331_380 Hb_002073_210--Hb_000331_380 Hb_002073_210--Hb_000431_050 Hb_000352_210 Hb_000352_210 Hb_002073_210--Hb_000352_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.583429 2.16348 30.7932 0 0.0397597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0233438 2.86963

CAGE analysis