Hb_001433_230

Information

Type -
Description -
Location Contig1433: 213562-219223
Sequence    

Annotation

kegg
ID rcu:RCOM_1434220
description kinesin heavy chain, putative
nr
ID XP_012088948.1
description PREDICTED: kinesin-4-like [Jatropha curcas]
swissprot
ID O81635
description Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2
trembl
ID A0A067JV52
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_23257 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin heavy

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11417: 213613-214147 , PASA_asmbl_11418: 214519-214962 , PASA_asmbl_11419: 215845-215958 , PASA_asmbl_11420: 216796-217274 , PASA_asmbl_11421: 218552-219335
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001433_230 0.0 - - PREDICTED: kinesin-4-like [Jatropha curcas]
2 Hb_022250_140 0.0642136699 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
3 Hb_014834_100 0.0686728178 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
4 Hb_006816_060 0.0693205039 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
5 Hb_001634_050 0.0791812439 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
6 Hb_005357_170 0.0809158944 - - Pectinesterase precursor, putative [Ricinus communis]
7 Hb_005396_020 0.081108867 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
8 Hb_103468_010 0.0833407105 - - protein binding protein, putative [Ricinus communis]
9 Hb_000521_060 0.084370041 - - PREDICTED: protein YLS3-like [Jatropha curcas]
10 Hb_002073_210 0.0866039762 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003060_020 0.0901837758 - - serine carboxypeptidase, putative [Ricinus communis]
12 Hb_055276_010 0.0923154598 - - hypothetical protein POPTR_0003s02950g [Populus trichocarpa]
13 Hb_001557_030 0.0928734734 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
14 Hb_006970_180 0.0931818547 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
15 Hb_006570_170 0.0946173839 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
16 Hb_003152_010 0.0948029563 - - -
17 Hb_006249_010 0.095106968 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
18 Hb_001887_010 0.0956913765 - - mta/sah nucleosidase, putative [Ricinus communis]
19 Hb_000107_240 0.0975431334 - - organic anion transporter, putative [Ricinus communis]
20 Hb_009158_010 0.0975614774 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]

Gene co-expression network

sample Hb_001433_230 Hb_001433_230 Hb_022250_140 Hb_022250_140 Hb_001433_230--Hb_022250_140 Hb_014834_100 Hb_014834_100 Hb_001433_230--Hb_014834_100 Hb_006816_060 Hb_006816_060 Hb_001433_230--Hb_006816_060 Hb_001634_050 Hb_001634_050 Hb_001433_230--Hb_001634_050 Hb_005357_170 Hb_005357_170 Hb_001433_230--Hb_005357_170 Hb_005396_020 Hb_005396_020 Hb_001433_230--Hb_005396_020 Hb_006570_170 Hb_006570_170 Hb_022250_140--Hb_006570_170 Hb_006970_180 Hb_006970_180 Hb_022250_140--Hb_006970_180 Hb_022250_140--Hb_006816_060 Hb_022250_140--Hb_001634_050 Hb_151436_010 Hb_151436_010 Hb_022250_140--Hb_151436_010 Hb_002073_210 Hb_002073_210 Hb_022250_140--Hb_002073_210 Hb_001557_030 Hb_001557_030 Hb_014834_100--Hb_001557_030 Hb_103468_010 Hb_103468_010 Hb_014834_100--Hb_103468_010 Hb_011224_030 Hb_011224_030 Hb_014834_100--Hb_011224_030 Hb_150179_010 Hb_150179_010 Hb_014834_100--Hb_150179_010 Hb_014834_100--Hb_002073_210 Hb_000521_060 Hb_000521_060 Hb_006816_060--Hb_000521_060 Hb_006816_060--Hb_005396_020 Hb_006816_060--Hb_006570_170 Hb_006816_060--Hb_001634_050 Hb_001634_050--Hb_006570_170 Hb_001634_050--Hb_005396_020 Hb_012180_070 Hb_012180_070 Hb_001634_050--Hb_012180_070 Hb_000107_240 Hb_000107_240 Hb_001634_050--Hb_000107_240 Hb_006249_010 Hb_006249_010 Hb_001634_050--Hb_006249_010 Hb_003685_070 Hb_003685_070 Hb_005357_170--Hb_003685_070 Hb_003765_010 Hb_003765_010 Hb_005357_170--Hb_003765_010 Hb_001887_010 Hb_001887_010 Hb_005357_170--Hb_001887_010 Hb_055276_010 Hb_055276_010 Hb_005357_170--Hb_055276_010 Hb_005357_170--Hb_011224_030 Hb_000816_090 Hb_000816_090 Hb_005396_020--Hb_000816_090 Hb_005396_020--Hb_012180_070 Hb_003060_020 Hb_003060_020 Hb_005396_020--Hb_003060_020 Hb_005396_020--Hb_006570_170 Hb_003528_090 Hb_003528_090 Hb_005396_020--Hb_003528_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0152051 0.0779327 0.519724 6.56587 0.00615137 0.0170489
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0109659 0 0.0304388 0.725791

CAGE analysis