Hb_055276_010

Information

Type -
Description -
Location Contig55276: 153-1252
Sequence    

Annotation

kegg
ID pop:POPTR_0003s02950g
description hypothetical protein
nr
ID XP_006385340.1
description hypothetical protein POPTR_0003s02950g [Populus trichocarpa]
swissprot
ID Q8LGU1
description ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3
trembl
ID U5GPD2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s02950g PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter c family member 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055276_010 0.0 - - hypothetical protein POPTR_0003s02950g [Populus trichocarpa]
2 Hb_009079_010 0.0550508894 - - JHL18I08.8 [Jatropha curcas]
3 Hb_001369_480 0.0779204011 transcription factor TF Family: NAC hypothetical protein POPTR_0012s14660g [Populus trichocarpa]
4 Hb_005357_170 0.0786052788 - - Pectinesterase precursor, putative [Ricinus communis]
5 Hb_000997_220 0.0789759746 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
6 Hb_000318_500 0.0895355045 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001433_230 0.0923154598 - - PREDICTED: kinesin-4-like [Jatropha curcas]
8 Hb_003754_010 0.0924931739 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
9 Hb_004957_010 0.0960487245 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
10 Hb_012114_090 0.0970395024 - - tubulin beta chain, putative [Ricinus communis]
11 Hb_004884_040 0.098043098 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
12 Hb_001308_010 0.0997561403 - - conserved hypothetical protein [Ricinus communis]
13 Hb_014834_100 0.1009960943 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
14 Hb_003580_020 0.101675063 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006573_120 0.1021680416 - - PREDICTED: DUF21 domain-containing protein At5g52790 [Jatropha curcas]
16 Hb_000483_340 0.1027662861 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000310_050 0.1038205122 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_011224_030 0.1044370523 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
19 Hb_031330_010 0.1060346589 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
20 Hb_003765_010 0.106714425 - - berberine bridge enzyme [Hevea brasiliensis]

Gene co-expression network

sample Hb_055276_010 Hb_055276_010 Hb_009079_010 Hb_009079_010 Hb_055276_010--Hb_009079_010 Hb_001369_480 Hb_001369_480 Hb_055276_010--Hb_001369_480 Hb_005357_170 Hb_005357_170 Hb_055276_010--Hb_005357_170 Hb_000997_220 Hb_000997_220 Hb_055276_010--Hb_000997_220 Hb_000318_500 Hb_000318_500 Hb_055276_010--Hb_000318_500 Hb_001433_230 Hb_001433_230 Hb_055276_010--Hb_001433_230 Hb_009079_010--Hb_000997_220 Hb_004884_040 Hb_004884_040 Hb_009079_010--Hb_004884_040 Hb_031330_010 Hb_031330_010 Hb_009079_010--Hb_031330_010 Hb_012114_090 Hb_012114_090 Hb_009079_010--Hb_012114_090 Hb_009079_010--Hb_000318_500 Hb_001369_480--Hb_012114_090 Hb_000336_120 Hb_000336_120 Hb_001369_480--Hb_000336_120 Hb_001269_180 Hb_001269_180 Hb_001369_480--Hb_001269_180 Hb_006717_060 Hb_006717_060 Hb_001369_480--Hb_006717_060 Hb_000699_220 Hb_000699_220 Hb_001369_480--Hb_000699_220 Hb_003685_070 Hb_003685_070 Hb_005357_170--Hb_003685_070 Hb_003765_010 Hb_003765_010 Hb_005357_170--Hb_003765_010 Hb_001887_010 Hb_001887_010 Hb_005357_170--Hb_001887_010 Hb_005357_170--Hb_001433_230 Hb_011224_030 Hb_011224_030 Hb_005357_170--Hb_011224_030 Hb_003754_010 Hb_003754_010 Hb_000997_220--Hb_003754_010 Hb_004957_010 Hb_004957_010 Hb_000997_220--Hb_004957_010 Hb_001308_010 Hb_001308_010 Hb_000997_220--Hb_001308_010 Hb_153544_020 Hb_153544_020 Hb_000997_220--Hb_153544_020 Hb_000483_340 Hb_000483_340 Hb_000997_220--Hb_000483_340 Hb_001856_250 Hb_001856_250 Hb_000997_220--Hb_001856_250 Hb_000318_500--Hb_004884_040 Hb_006249_010 Hb_006249_010 Hb_000318_500--Hb_006249_010 Hb_000318_500--Hb_000483_340 Hb_002734_020 Hb_002734_020 Hb_000318_500--Hb_002734_020 Hb_000816_090 Hb_000816_090 Hb_000318_500--Hb_000816_090 Hb_000327_350 Hb_000327_350 Hb_000318_500--Hb_000327_350 Hb_022250_140 Hb_022250_140 Hb_001433_230--Hb_022250_140 Hb_014834_100 Hb_014834_100 Hb_001433_230--Hb_014834_100 Hb_006816_060 Hb_006816_060 Hb_001433_230--Hb_006816_060 Hb_001634_050 Hb_001634_050 Hb_001433_230--Hb_001634_050 Hb_005396_020 Hb_005396_020 Hb_001433_230--Hb_005396_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0397602 0.0796062 0.617333 6.78959 0 0.0394598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.25641

CAGE analysis