Hb_004884_040

Information

Type -
Description -
Location Contig4884: 36318-37554
Sequence    

Annotation

kegg
ID pop:POPTR_0016s12910g
description POPTRDRAFT_577020; hypothetical protein
nr
ID XP_002323601.2
description hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
swissprot
ID Q8GYB1
description Nudix hydrolase 15, mitochondrial OS=Arabidopsis thaliana GN=NUDT15 PE=1 SV=2
trembl
ID B9IGE3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s12910g PE=4 SV=2
Gene Ontology
ID GO:0016787
description nudix hydrolase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004884_040 0.0 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
2 Hb_002734_020 0.0245565537 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
3 Hb_000483_340 0.0324001567 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001856_250 0.0424071807 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
5 Hb_000318_500 0.0530069713 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000645_230 0.0553378261 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
7 Hb_031330_010 0.0641329066 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
8 Hb_000684_190 0.0662102893 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
9 Hb_002785_020 0.0700977305 - - PREDICTED: laccase-4-like [Jatropha curcas]
10 Hb_000997_220 0.0736330871 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
11 Hb_000422_090 0.0746223162 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009079_010 0.0771344814 - - JHL18I08.8 [Jatropha curcas]
13 Hb_027577_010 0.0804614929 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
14 Hb_006651_020 0.0822338818 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
15 Hb_010833_010 0.0878291498 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
16 Hb_000729_040 0.0879345975 - - xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]
17 Hb_004030_040 0.0884580676 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
18 Hb_002757_030 0.089990021 - - unnamed protein product [Vitis vinifera]
19 Hb_000487_350 0.09005824 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000327_350 0.0923401887 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]

Gene co-expression network

sample Hb_004884_040 Hb_004884_040 Hb_002734_020 Hb_002734_020 Hb_004884_040--Hb_002734_020 Hb_000483_340 Hb_000483_340 Hb_004884_040--Hb_000483_340 Hb_001856_250 Hb_001856_250 Hb_004884_040--Hb_001856_250 Hb_000318_500 Hb_000318_500 Hb_004884_040--Hb_000318_500 Hb_000645_230 Hb_000645_230 Hb_004884_040--Hb_000645_230 Hb_031330_010 Hb_031330_010 Hb_004884_040--Hb_031330_010 Hb_002734_020--Hb_001856_250 Hb_002734_020--Hb_000483_340 Hb_000422_090 Hb_000422_090 Hb_002734_020--Hb_000422_090 Hb_002785_020 Hb_002785_020 Hb_002734_020--Hb_002785_020 Hb_002734_020--Hb_000645_230 Hb_000483_340--Hb_001856_250 Hb_000483_340--Hb_031330_010 Hb_000997_220 Hb_000997_220 Hb_000483_340--Hb_000997_220 Hb_000483_340--Hb_000645_230 Hb_027577_010 Hb_027577_010 Hb_001856_250--Hb_027577_010 Hb_006651_020 Hb_006651_020 Hb_001856_250--Hb_006651_020 Hb_000729_040 Hb_000729_040 Hb_001856_250--Hb_000729_040 Hb_006249_010 Hb_006249_010 Hb_000318_500--Hb_006249_010 Hb_000318_500--Hb_000483_340 Hb_000318_500--Hb_002734_020 Hb_000816_090 Hb_000816_090 Hb_000318_500--Hb_000816_090 Hb_000327_350 Hb_000327_350 Hb_000318_500--Hb_000327_350 Hb_000684_190 Hb_000684_190 Hb_000645_230--Hb_000684_190 Hb_000645_230--Hb_002785_020 Hb_000645_230--Hb_031330_010 Hb_031330_010--Hb_000684_190 Hb_071079_040 Hb_071079_040 Hb_031330_010--Hb_071079_040 Hb_031330_010--Hb_001856_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0227328 0.0636701 1.31394 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.297246

CAGE analysis