Hb_000684_190

Information

Type -
Description -
Location Contig684: 220022-222497
Sequence    

Annotation

kegg
ID rcu:RCOM_0819440
description beta-1,3-glucuronyltransferase, putative (EC:2.4.1.135)
nr
ID XP_002525174.1
description beta-1,3-glucuronyltransferase, putative [Ricinus communis]
swissprot
ID Q9ZQC6
description Probable beta-1,4-xylosyltransferase IRX9 OS=Arabidopsis thaliana GN=IRX9 PE=2 SV=1
trembl
ID B9SGQ5
description Beta-1,3-glucuronyltransferase, putative OS=Ricinus communis GN=RCOM_0819440 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable beta- -xylosyltransferase irx9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53982: 220066-222287
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_190 0.0 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
2 Hb_000645_230 0.0316349075 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
3 Hb_002785_020 0.0481604801 - - PREDICTED: laccase-4-like [Jatropha curcas]
4 Hb_001935_200 0.0560070702 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
5 Hb_000422_090 0.0572647502 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004884_040 0.0662102893 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
7 Hb_002734_020 0.0662587916 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
8 Hb_031330_010 0.0699528614 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
9 Hb_003788_030 0.0699629713 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
10 Hb_000483_340 0.0725999695 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000339_060 0.0729662332 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_070771_010 0.0756198981 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
13 Hb_003645_040 0.0764909403 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
14 Hb_002085_060 0.0783492595 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001856_250 0.078768096 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
16 Hb_011912_010 0.0816272103 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
17 Hb_003638_020 0.0818080641 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
18 Hb_001307_180 0.0832408953 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
19 Hb_001158_170 0.0861648571 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002660_180 0.0886153361 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000684_190 Hb_000684_190 Hb_000645_230 Hb_000645_230 Hb_000684_190--Hb_000645_230 Hb_002785_020 Hb_002785_020 Hb_000684_190--Hb_002785_020 Hb_001935_200 Hb_001935_200 Hb_000684_190--Hb_001935_200 Hb_000422_090 Hb_000422_090 Hb_000684_190--Hb_000422_090 Hb_004884_040 Hb_004884_040 Hb_000684_190--Hb_004884_040 Hb_002734_020 Hb_002734_020 Hb_000684_190--Hb_002734_020 Hb_000645_230--Hb_002785_020 Hb_031330_010 Hb_031330_010 Hb_000645_230--Hb_031330_010 Hb_000645_230--Hb_004884_040 Hb_000645_230--Hb_002734_020 Hb_000483_340 Hb_000483_340 Hb_000645_230--Hb_000483_340 Hb_003788_030 Hb_003788_030 Hb_002785_020--Hb_003788_030 Hb_002785_020--Hb_002734_020 Hb_002785_020--Hb_001935_200 Hb_002785_020--Hb_000422_090 Hb_001935_200--Hb_003788_030 Hb_001935_200--Hb_000645_230 Hb_001935_200--Hb_000422_090 Hb_155215_030 Hb_155215_030 Hb_001935_200--Hb_155215_030 Hb_002636_170 Hb_002636_170 Hb_000422_090--Hb_002636_170 Hb_000696_130 Hb_000696_130 Hb_000422_090--Hb_000696_130 Hb_002660_180 Hb_002660_180 Hb_000422_090--Hb_002660_180 Hb_000422_090--Hb_002734_020 Hb_001856_250 Hb_001856_250 Hb_000422_090--Hb_001856_250 Hb_004884_040--Hb_002734_020 Hb_004884_040--Hb_000483_340 Hb_004884_040--Hb_001856_250 Hb_000318_500 Hb_000318_500 Hb_004884_040--Hb_000318_500 Hb_004884_040--Hb_031330_010 Hb_002734_020--Hb_001856_250 Hb_002734_020--Hb_000483_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.84676 1.79279 55.0344 0.0297474 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0770184 15.5372

CAGE analysis