Hb_002785_020

Information

Type -
Description -
Location Contig2785: 41610-45909
Sequence    

Annotation

kegg
ID rcu:RCOM_0498690
description laccase, putative (EC:1.10.3.3)
nr
ID XP_012087951.1
description PREDICTED: laccase-4-like [Jatropha curcas]
swissprot
ID Q0IQU1
description Laccase-22 OS=Oryza sativa subsp. japonica GN=LAC22 PE=2 SV=2
trembl
ID B9SWP8
description Laccase OS=Ricinus communis GN=RCOM_0498690 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase-4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29104: 41668-43940
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002785_020 0.0 - - PREDICTED: laccase-4-like [Jatropha curcas]
2 Hb_000684_190 0.0481604801 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
3 Hb_000645_230 0.0483735427 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
4 Hb_003788_030 0.0543401947 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
5 Hb_002734_020 0.0640974967 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
6 Hb_001935_200 0.0650637938 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
7 Hb_000422_090 0.0694709876 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004884_040 0.0700977305 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
9 Hb_000483_340 0.0718916283 - - conserved hypothetical protein [Ricinus communis]
10 Hb_009767_040 0.0723433433 - - PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica]
11 Hb_031330_010 0.0747992911 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
12 Hb_000327_350 0.0757074608 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
13 Hb_000521_030 0.0757157492 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
14 Hb_001856_250 0.0777227924 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
15 Hb_000193_130 0.079084766 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_000581_010 0.0799314198 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
17 Hb_000487_350 0.0808940806 - - conserved hypothetical protein [Ricinus communis]
18 Hb_027577_010 0.087131482 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
19 Hb_002031_020 0.0919105448 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
20 Hb_002636_170 0.0940609706 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002785_020 Hb_002785_020 Hb_000684_190 Hb_000684_190 Hb_002785_020--Hb_000684_190 Hb_000645_230 Hb_000645_230 Hb_002785_020--Hb_000645_230 Hb_003788_030 Hb_003788_030 Hb_002785_020--Hb_003788_030 Hb_002734_020 Hb_002734_020 Hb_002785_020--Hb_002734_020 Hb_001935_200 Hb_001935_200 Hb_002785_020--Hb_001935_200 Hb_000422_090 Hb_000422_090 Hb_002785_020--Hb_000422_090 Hb_000684_190--Hb_000645_230 Hb_000684_190--Hb_001935_200 Hb_000684_190--Hb_000422_090 Hb_004884_040 Hb_004884_040 Hb_000684_190--Hb_004884_040 Hb_000684_190--Hb_002734_020 Hb_031330_010 Hb_031330_010 Hb_000645_230--Hb_031330_010 Hb_000645_230--Hb_004884_040 Hb_000645_230--Hb_002734_020 Hb_000483_340 Hb_000483_340 Hb_000645_230--Hb_000483_340 Hb_003788_030--Hb_001935_200 Hb_003788_030--Hb_000684_190 Hb_003788_030--Hb_000422_090 Hb_000696_130 Hb_000696_130 Hb_003788_030--Hb_000696_130 Hb_002636_170 Hb_002636_170 Hb_003788_030--Hb_002636_170 Hb_002734_020--Hb_004884_040 Hb_001856_250 Hb_001856_250 Hb_002734_020--Hb_001856_250 Hb_002734_020--Hb_000483_340 Hb_002734_020--Hb_000422_090 Hb_001935_200--Hb_000645_230 Hb_001935_200--Hb_000422_090 Hb_155215_030 Hb_155215_030 Hb_001935_200--Hb_155215_030 Hb_000422_090--Hb_002636_170 Hb_000422_090--Hb_000696_130 Hb_002660_180 Hb_002660_180 Hb_000422_090--Hb_002660_180 Hb_000422_090--Hb_001856_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0814627 7.04947 6.00295 276.235 0.215042 0.0883798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0182118 0 0.702966 63.0009

CAGE analysis