Hb_155215_030

Information

Type -
Description -
Location Contig155215: 11076-14654
Sequence    

Annotation

kegg
ID rcu:RCOM_0267570
description Cucumisin precursor, putative (EC:1.3.1.74)
nr
ID XP_002530614.1
description Cucumisin precursor, putative [Ricinus communis]
swissprot
ID F4JXC5
description Subtilisin-like protease SBT5.4 OS=Arabidopsis thaliana GN=SBT5.4 PE=1 SV=1
trembl
ID B9SX95
description Cucumisin, putative OS=Ricinus communis GN=RCOM_0267570 PE=4 SV=1
Gene Ontology
ID GO:0008233
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13482: 11199-11841
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155215_030 0.0 - - Cucumisin precursor, putative [Ricinus communis]
2 Hb_004529_010 0.0705643188 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
3 Hb_001935_200 0.0847934346 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
4 Hb_003788_030 0.1115895382 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
5 Hb_004449_100 0.1260280179 - - -
6 Hb_000684_190 0.1290205931 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
7 Hb_003645_040 0.1294540893 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
8 Hb_002785_020 0.1295276036 - - PREDICTED: laccase-4-like [Jatropha curcas]
9 Hb_009767_040 0.1372424924 - - PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica]
10 Hb_002085_060 0.1407754629 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000645_230 0.1431321863 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
12 Hb_003638_020 0.1491394969 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
13 Hb_000339_060 0.1512866792 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
14 Hb_070771_010 0.1527909015 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
15 Hb_001307_180 0.1528438725 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
16 Hb_012633_020 0.153588963 - - laccase, putative [Ricinus communis]
17 Hb_000696_130 0.1538804763 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_188281_020 0.1540321922 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
19 Hb_000422_090 0.1544668746 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002660_180 0.1547905917 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_155215_030 Hb_155215_030 Hb_004529_010 Hb_004529_010 Hb_155215_030--Hb_004529_010 Hb_001935_200 Hb_001935_200 Hb_155215_030--Hb_001935_200 Hb_003788_030 Hb_003788_030 Hb_155215_030--Hb_003788_030 Hb_004449_100 Hb_004449_100 Hb_155215_030--Hb_004449_100 Hb_000684_190 Hb_000684_190 Hb_155215_030--Hb_000684_190 Hb_003645_040 Hb_003645_040 Hb_155215_030--Hb_003645_040 Hb_000853_140 Hb_000853_140 Hb_004529_010--Hb_000853_140 Hb_004529_010--Hb_001935_200 Hb_008406_170 Hb_008406_170 Hb_004529_010--Hb_008406_170 Hb_000953_110 Hb_000953_110 Hb_004529_010--Hb_000953_110 Hb_004158_040 Hb_004158_040 Hb_004529_010--Hb_004158_040 Hb_001935_200--Hb_000684_190 Hb_001935_200--Hb_003788_030 Hb_002785_020 Hb_002785_020 Hb_001935_200--Hb_002785_020 Hb_000645_230 Hb_000645_230 Hb_001935_200--Hb_000645_230 Hb_000422_090 Hb_000422_090 Hb_001935_200--Hb_000422_090 Hb_003788_030--Hb_002785_020 Hb_003788_030--Hb_000684_190 Hb_003788_030--Hb_000422_090 Hb_000696_130 Hb_000696_130 Hb_003788_030--Hb_000696_130 Hb_002636_170 Hb_002636_170 Hb_003788_030--Hb_002636_170 Hb_009767_040 Hb_009767_040 Hb_004449_100--Hb_009767_040 Hb_057343_010 Hb_057343_010 Hb_004449_100--Hb_057343_010 Hb_000193_130 Hb_000193_130 Hb_004449_100--Hb_000193_130 Hb_001141_260 Hb_001141_260 Hb_004449_100--Hb_001141_260 Hb_000521_030 Hb_000521_030 Hb_004449_100--Hb_000521_030 Hb_025557_080 Hb_025557_080 Hb_004449_100--Hb_025557_080 Hb_000684_190--Hb_000645_230 Hb_000684_190--Hb_002785_020 Hb_000684_190--Hb_000422_090 Hb_004884_040 Hb_004884_040 Hb_000684_190--Hb_004884_040 Hb_002734_020 Hb_002734_020 Hb_000684_190--Hb_002734_020 Hb_001307_180 Hb_001307_180 Hb_003645_040--Hb_001307_180 Hb_002085_060 Hb_002085_060 Hb_003645_040--Hb_002085_060 Hb_012633_020 Hb_012633_020 Hb_003645_040--Hb_012633_020 Hb_011912_010 Hb_011912_010 Hb_003645_040--Hb_011912_010 Hb_070771_010 Hb_070771_010 Hb_003645_040--Hb_070771_010 Hb_064047_020 Hb_064047_020 Hb_003645_040--Hb_064047_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00844967 0 0.117447 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0323282

CAGE analysis