Hb_064047_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig64047: 17128-19039
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13190g
description POPTRDRAFT_646666; hypothetical protein
nr
ID XP_002304517.1
description hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
swissprot
ID Q8LPH6
description Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1
trembl
ID B9GWV1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13190g PE=4 SV=1
Gene Ontology
ID GO:0005634
description r2r3-myb transcription

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_064047_020 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
2 Hb_000413_030 0.0497042172 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
3 Hb_011912_010 0.0566088099 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
4 Hb_002085_060 0.059515485 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002750_030 0.0619052111 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
6 Hb_003645_040 0.0659301297 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
7 Hb_070771_010 0.0676874868 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
8 Hb_001307_180 0.0706425557 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
9 Hb_001269_160 0.072114305 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002499_030 0.0726502215 - - receptor-kinase, putative [Ricinus communis]
11 Hb_000339_060 0.0790332057 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_012633_020 0.0811276368 - - laccase, putative [Ricinus communis]
13 Hb_005056_040 0.0813143716 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
14 Hb_003638_020 0.0817536296 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
15 Hb_006065_030 0.086397883 - - PREDICTED: filament-like plant protein 7 isoform X1 [Jatropha curcas]
16 Hb_000836_640 0.0876116526 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
17 Hb_009476_080 0.0877098231 - - BnaA03g18920D [Brassica napus]
18 Hb_003747_160 0.0884178197 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000964_080 0.088937693 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
20 Hb_001096_010 0.0890450437 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]

Gene co-expression network

sample Hb_064047_020 Hb_064047_020 Hb_000413_030 Hb_000413_030 Hb_064047_020--Hb_000413_030 Hb_011912_010 Hb_011912_010 Hb_064047_020--Hb_011912_010 Hb_002085_060 Hb_002085_060 Hb_064047_020--Hb_002085_060 Hb_002750_030 Hb_002750_030 Hb_064047_020--Hb_002750_030 Hb_003645_040 Hb_003645_040 Hb_064047_020--Hb_003645_040 Hb_070771_010 Hb_070771_010 Hb_064047_020--Hb_070771_010 Hb_000413_030--Hb_011912_010 Hb_000964_080 Hb_000964_080 Hb_000413_030--Hb_000964_080 Hb_003376_060 Hb_003376_060 Hb_000413_030--Hb_003376_060 Hb_000037_150 Hb_000037_150 Hb_000413_030--Hb_000037_150 Hb_001307_180 Hb_001307_180 Hb_000413_030--Hb_001307_180 Hb_011912_010--Hb_001307_180 Hb_011912_010--Hb_070771_010 Hb_011912_010--Hb_000037_150 Hb_011912_010--Hb_003645_040 Hb_000339_060 Hb_000339_060 Hb_002085_060--Hb_000339_060 Hb_003638_020 Hb_003638_020 Hb_002085_060--Hb_003638_020 Hb_002085_060--Hb_070771_010 Hb_002085_060--Hb_003645_040 Hb_002499_030 Hb_002499_030 Hb_002085_060--Hb_002499_030 Hb_000836_640 Hb_000836_640 Hb_002750_030--Hb_000836_640 Hb_000162_010 Hb_000162_010 Hb_002750_030--Hb_000162_010 Hb_001477_050 Hb_001477_050 Hb_002750_030--Hb_001477_050 Hb_005056_040 Hb_005056_040 Hb_002750_030--Hb_005056_040 Hb_001500_090 Hb_001500_090 Hb_002750_030--Hb_001500_090 Hb_003645_040--Hb_001307_180 Hb_012633_020 Hb_012633_020 Hb_003645_040--Hb_012633_020 Hb_003645_040--Hb_070771_010 Hb_070771_010--Hb_000339_060 Hb_070771_010--Hb_001307_180 Hb_070771_010--Hb_003638_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0590155 1.20699 1.05891 28.3634 0.0522808 0.0319519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.588996 12.2889

CAGE analysis