Hb_000964_080

Information

Type transcription factor
Description TF Family: MYB
Location Contig964: 61725-64954
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06630g
description POPTRDRAFT_804434; hypothetical protein
nr
ID XP_012065560.1
description PREDICTED: transcription factor MYB86 [Jatropha curcas]
swissprot
ID Q9LXV2
description Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1
trembl
ID A0A067LFZ9
description MYB family protein OS=Jatropha curcas GN=JCGZ_16757 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb46-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63851: 61701-64263
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000964_080 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
2 Hb_000413_030 0.0515592145 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
3 Hb_003376_060 0.0563323738 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
4 Hb_004846_110 0.0607320506 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
5 Hb_011912_010 0.0613429531 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
6 Hb_000037_150 0.0644144153 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
7 Hb_001158_170 0.0728471481 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001051_060 0.0740889106 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
9 Hb_001456_030 0.074503299 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
10 Hb_001307_180 0.0745972917 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
11 Hb_005616_020 0.0750557305 - - kinase, putative [Ricinus communis]
12 Hb_070771_010 0.0797014037 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
13 Hb_003747_160 0.0819579068 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001189_080 0.0832588418 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004225_120 0.0844999424 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
16 Hb_005686_040 0.0856259449 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010288_010 0.0886456485 - - Beta-glucosidase, putative [Ricinus communis]
18 Hb_064047_020 0.088937693 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
19 Hb_002660_180 0.0889579509 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000836_640 0.0890833287 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]

Gene co-expression network

sample Hb_000964_080 Hb_000964_080 Hb_000413_030 Hb_000413_030 Hb_000964_080--Hb_000413_030 Hb_003376_060 Hb_003376_060 Hb_000964_080--Hb_003376_060 Hb_004846_110 Hb_004846_110 Hb_000964_080--Hb_004846_110 Hb_011912_010 Hb_011912_010 Hb_000964_080--Hb_011912_010 Hb_000037_150 Hb_000037_150 Hb_000964_080--Hb_000037_150 Hb_001158_170 Hb_001158_170 Hb_000964_080--Hb_001158_170 Hb_000413_030--Hb_011912_010 Hb_064047_020 Hb_064047_020 Hb_000413_030--Hb_064047_020 Hb_000413_030--Hb_003376_060 Hb_000413_030--Hb_000037_150 Hb_001307_180 Hb_001307_180 Hb_000413_030--Hb_001307_180 Hb_001456_030 Hb_001456_030 Hb_003376_060--Hb_001456_030 Hb_011224_070 Hb_011224_070 Hb_003376_060--Hb_011224_070 Hb_005616_020 Hb_005616_020 Hb_003376_060--Hb_005616_020 Hb_003747_160 Hb_003747_160 Hb_003376_060--Hb_003747_160 Hb_004846_110--Hb_000037_150 Hb_004846_110--Hb_011912_010 Hb_004846_110--Hb_001307_180 Hb_002660_180 Hb_002660_180 Hb_004846_110--Hb_002660_180 Hb_004846_110--Hb_000413_030 Hb_011912_010--Hb_001307_180 Hb_070771_010 Hb_070771_010 Hb_011912_010--Hb_070771_010 Hb_011912_010--Hb_000037_150 Hb_003645_040 Hb_003645_040 Hb_011912_010--Hb_003645_040 Hb_011912_010--Hb_064047_020 Hb_000037_150--Hb_002660_180 Hb_024074_030 Hb_024074_030 Hb_000037_150--Hb_024074_030 Hb_001477_050 Hb_001477_050 Hb_000037_150--Hb_001477_050 Hb_000696_130 Hb_000696_130 Hb_000037_150--Hb_000696_130 Hb_000608_090 Hb_000608_090 Hb_001158_170--Hb_000608_090 Hb_001158_170--Hb_004846_110 Hb_000684_190 Hb_000684_190 Hb_001158_170--Hb_000684_190 Hb_000645_230 Hb_000645_230 Hb_001158_170--Hb_000645_230 Hb_000422_090 Hb_000422_090 Hb_001158_170--Hb_000422_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.134192 0.428146 6.66424 0.0400276 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0298238 2.97416

CAGE analysis