Hb_001456_030

Information

Type -
Description -
Location Contig1456: 35805-38663
Sequence    

Annotation

kegg
ID vvi:100260187
description bifunctional pinoresinol-lariciresinol reductase 2
nr
ID XP_002283648.1
description PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
swissprot
ID E6Y2X0
description Bifunctional pinoresinol-lariciresinol reductase 2 OS=Linum usitatissimum GN=PLR_Lu2 PE=1 SV=1
trembl
ID F6HQR3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g00550 PE=4 SV=1
Gene Ontology
ID GO:0010283
description bifunctional pinoresinol-lariciresinol reductase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11822: 35920-38463
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001456_030 0.0 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
2 Hb_005616_020 0.044602086 - - kinase, putative [Ricinus communis]
3 Hb_003376_060 0.0452988057 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
4 Hb_000227_360 0.0693203992 - - PREDICTED: mavicyanin [Jatropha curcas]
5 Hb_000462_120 0.0708818861 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
6 Hb_001104_060 0.0737100862 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
7 Hb_000964_080 0.074503299 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
8 Hb_000413_030 0.0749967246 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
9 Hb_012114_090 0.0759594005 - - tubulin beta chain, putative [Ricinus communis]
10 Hb_000699_220 0.0772616181 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
11 Hb_011224_070 0.0823422322 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
12 Hb_000531_030 0.0829314376 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006717_060 0.0834213632 - - PREDICTED: peroxidase 42 [Jatropha curcas]
14 Hb_000608_090 0.0847791749 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000130_250 0.0887622524 - - PREDICTED: protein trichome birefringence-like 31 [Jatropha curcas]
16 Hb_003580_020 0.0920594909 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003858_010 0.0938364015 - - xyloglucan endotransglucosylase/hydrolase [Gossypium hirsutum]
18 Hb_004225_120 0.0949636686 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
19 Hb_011344_040 0.0964088079 - - PREDICTED: 21 kDa protein [Jatropha curcas]
20 Hb_004846_110 0.0966773014 - - hypothetical protein JCGZ_04591 [Jatropha curcas]

Gene co-expression network

sample Hb_001456_030 Hb_001456_030 Hb_005616_020 Hb_005616_020 Hb_001456_030--Hb_005616_020 Hb_003376_060 Hb_003376_060 Hb_001456_030--Hb_003376_060 Hb_000227_360 Hb_000227_360 Hb_001456_030--Hb_000227_360 Hb_000462_120 Hb_000462_120 Hb_001456_030--Hb_000462_120 Hb_001104_060 Hb_001104_060 Hb_001456_030--Hb_001104_060 Hb_000964_080 Hb_000964_080 Hb_001456_030--Hb_000964_080 Hb_005616_020--Hb_000462_120 Hb_005616_020--Hb_003376_060 Hb_000699_220 Hb_000699_220 Hb_005616_020--Hb_000699_220 Hb_000413_030 Hb_000413_030 Hb_005616_020--Hb_000413_030 Hb_000608_090 Hb_000608_090 Hb_005616_020--Hb_000608_090 Hb_011224_070 Hb_011224_070 Hb_003376_060--Hb_011224_070 Hb_003376_060--Hb_000964_080 Hb_003376_060--Hb_000413_030 Hb_003747_160 Hb_003747_160 Hb_003376_060--Hb_003747_160 Hb_108090_010 Hb_108090_010 Hb_000227_360--Hb_108090_010 Hb_005440_040 Hb_005440_040 Hb_000227_360--Hb_005440_040 Hb_003858_010 Hb_003858_010 Hb_000227_360--Hb_003858_010 Hb_011344_040 Hb_011344_040 Hb_000227_360--Hb_011344_040 Hb_001357_290 Hb_001357_290 Hb_000227_360--Hb_001357_290 Hb_003580_020 Hb_003580_020 Hb_000462_120--Hb_003580_020 Hb_005291_020 Hb_005291_020 Hb_000462_120--Hb_005291_020 Hb_000729_040 Hb_000729_040 Hb_000462_120--Hb_000729_040 Hb_027577_010 Hb_027577_010 Hb_000462_120--Hb_027577_010 Hb_000531_030 Hb_000531_030 Hb_001104_060--Hb_000531_030 Hb_001104_060--Hb_011224_070 Hb_001104_060--Hb_003376_060 Hb_001104_060--Hb_000699_220 Hb_001104_060--Hb_000227_360 Hb_000964_080--Hb_000413_030 Hb_004846_110 Hb_004846_110 Hb_000964_080--Hb_004846_110 Hb_011912_010 Hb_011912_010 Hb_000964_080--Hb_011912_010 Hb_000037_150 Hb_000037_150 Hb_000964_080--Hb_000037_150 Hb_001158_170 Hb_001158_170 Hb_000964_080--Hb_001158_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0203745 0.736913 4.91855 45.4218 0.0572817 0.0440789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.426902 17.4062

CAGE analysis