Hb_003376_060

Information

Type -
Description -
Location Contig3376: 52218-55019
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13320g
description hypothetical protein
nr
ID XP_012082299.1
description PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
swissprot
ID Q9ZQC6
description Probable beta-1,4-xylosyltransferase IRX9 OS=Arabidopsis thaliana GN=IRX9 PE=2 SV=1
trembl
ID A0A067JYN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16470 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable beta- -xylosyltransferase irx9 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35325: 52251-54989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_060 0.0 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
2 Hb_001456_030 0.0452988057 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
3 Hb_011224_070 0.0517038722 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
4 Hb_005616_020 0.0554971307 - - kinase, putative [Ricinus communis]
5 Hb_000964_080 0.0563323738 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
6 Hb_000413_030 0.0571228838 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
7 Hb_003747_160 0.0616275382 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004225_120 0.0627194943 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
9 Hb_001051_060 0.0712893873 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
10 Hb_001104_060 0.0722801413 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
11 Hb_004846_110 0.0744148621 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
12 Hb_000227_360 0.0752528621 - - PREDICTED: mavicyanin [Jatropha curcas]
13 Hb_070771_010 0.0755050924 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
14 Hb_001269_160 0.0783474266 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011912_010 0.0785173704 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
16 Hb_000130_250 0.0826281385 - - PREDICTED: protein trichome birefringence-like 31 [Jatropha curcas]
17 Hb_000608_090 0.0830188149 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002499_030 0.0832243729 - - receptor-kinase, putative [Ricinus communis]
19 Hb_009476_080 0.0837294919 - - BnaA03g18920D [Brassica napus]
20 Hb_001096_010 0.0859511511 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]

Gene co-expression network

sample Hb_003376_060 Hb_003376_060 Hb_001456_030 Hb_001456_030 Hb_003376_060--Hb_001456_030 Hb_011224_070 Hb_011224_070 Hb_003376_060--Hb_011224_070 Hb_005616_020 Hb_005616_020 Hb_003376_060--Hb_005616_020 Hb_000964_080 Hb_000964_080 Hb_003376_060--Hb_000964_080 Hb_000413_030 Hb_000413_030 Hb_003376_060--Hb_000413_030 Hb_003747_160 Hb_003747_160 Hb_003376_060--Hb_003747_160 Hb_001456_030--Hb_005616_020 Hb_000227_360 Hb_000227_360 Hb_001456_030--Hb_000227_360 Hb_000462_120 Hb_000462_120 Hb_001456_030--Hb_000462_120 Hb_001104_060 Hb_001104_060 Hb_001456_030--Hb_001104_060 Hb_001456_030--Hb_000964_080 Hb_011224_070--Hb_003747_160 Hb_004225_120 Hb_004225_120 Hb_011224_070--Hb_004225_120 Hb_001511_220 Hb_001511_220 Hb_011224_070--Hb_001511_220 Hb_001096_010 Hb_001096_010 Hb_011224_070--Hb_001096_010 Hb_005614_020 Hb_005614_020 Hb_011224_070--Hb_005614_020 Hb_005616_020--Hb_000462_120 Hb_000699_220 Hb_000699_220 Hb_005616_020--Hb_000699_220 Hb_005616_020--Hb_000413_030 Hb_000608_090 Hb_000608_090 Hb_005616_020--Hb_000608_090 Hb_000964_080--Hb_000413_030 Hb_004846_110 Hb_004846_110 Hb_000964_080--Hb_004846_110 Hb_011912_010 Hb_011912_010 Hb_000964_080--Hb_011912_010 Hb_000037_150 Hb_000037_150 Hb_000964_080--Hb_000037_150 Hb_001158_170 Hb_001158_170 Hb_000964_080--Hb_001158_170 Hb_000413_030--Hb_011912_010 Hb_064047_020 Hb_064047_020 Hb_000413_030--Hb_064047_020 Hb_000413_030--Hb_000037_150 Hb_001307_180 Hb_001307_180 Hb_000413_030--Hb_001307_180 Hb_001051_060 Hb_001051_060 Hb_003747_160--Hb_001051_060 Hb_015807_090 Hb_015807_090 Hb_003747_160--Hb_015807_090 Hb_005686_040 Hb_005686_040 Hb_003747_160--Hb_005686_040 Hb_009476_080 Hb_009476_080 Hb_003747_160--Hb_009476_080 Hb_003747_160--Hb_004225_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0783269 2.59032 8.39546 89.3086 0.0858919 0.0737892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.449581 38.8218

CAGE analysis