Hb_001051_060

Information

Type -
Description -
Location Contig1051: 93614-96714
Sequence    

Annotation

kegg
ID rcu:RCOM_0034370
description UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative
nr
ID XP_002529937.1
description UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
swissprot
ID Q8RXL8
description Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1
trembl
ID B9SVB8
description UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative OS=Ricinus communis GN=RCOM_0034370 PE=4 SV=1
Gene Ontology
ID GO:0016021
description uncharacterized membrane protein at1g06890-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01729: 93677-96644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001051_060 0.0 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
2 Hb_005686_040 0.0334608931 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003747_160 0.0385257038 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000086_490 0.0408568336 - - cellulose synthase [Populus tomentosa]
5 Hb_005523_030 0.04569531 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
6 Hb_015807_090 0.0469620244 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
7 Hb_002078_180 0.0538330065 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
8 Hb_001189_080 0.0568802391 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002662_070 0.0602554955 - - hypothetical protein JCGZ_16102 [Jatropha curcas]
10 Hb_001935_060 0.0608340407 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
11 Hb_009476_080 0.0614617105 - - BnaA03g18920D [Brassica napus]
12 Hb_000776_090 0.0632153522 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
13 Hb_012633_020 0.0646787518 - - laccase, putative [Ricinus communis]
14 Hb_002835_360 0.0657661565 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
15 Hb_000836_640 0.0667613838 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
16 Hb_001377_220 0.0669807177 - - dopamine beta-monooxygenase, putative [Ricinus communis]
17 Hb_050514_030 0.0685217012 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
18 Hb_003376_060 0.0712893873 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
19 Hb_070771_010 0.0734609102 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
20 Hb_001307_180 0.0734615471 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001051_060 Hb_001051_060 Hb_005686_040 Hb_005686_040 Hb_001051_060--Hb_005686_040 Hb_003747_160 Hb_003747_160 Hb_001051_060--Hb_003747_160 Hb_000086_490 Hb_000086_490 Hb_001051_060--Hb_000086_490 Hb_005523_030 Hb_005523_030 Hb_001051_060--Hb_005523_030 Hb_015807_090 Hb_015807_090 Hb_001051_060--Hb_015807_090 Hb_002078_180 Hb_002078_180 Hb_001051_060--Hb_002078_180 Hb_005686_040--Hb_002078_180 Hb_005686_040--Hb_000086_490 Hb_002835_360 Hb_002835_360 Hb_005686_040--Hb_002835_360 Hb_005686_040--Hb_005523_030 Hb_005686_040--Hb_015807_090 Hb_003747_160--Hb_015807_090 Hb_011224_070 Hb_011224_070 Hb_003747_160--Hb_011224_070 Hb_003747_160--Hb_005686_040 Hb_009476_080 Hb_009476_080 Hb_003747_160--Hb_009476_080 Hb_004225_120 Hb_004225_120 Hb_003747_160--Hb_004225_120 Hb_000086_490--Hb_005523_030 Hb_000086_490--Hb_015807_090 Hb_000328_030 Hb_000328_030 Hb_000086_490--Hb_000328_030 Hb_000086_490--Hb_002078_180 Hb_005523_030--Hb_015807_090 Hb_000776_090 Hb_000776_090 Hb_005523_030--Hb_000776_090 Hb_005523_030--Hb_002078_180 Hb_015807_090--Hb_002078_180 Hb_002078_180--Hb_002835_360 Hb_002078_180--Hb_009476_080 Hb_001935_060 Hb_001935_060 Hb_002078_180--Hb_001935_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.112754 8.33316 12.563 189.502 0.20446 0.194915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.514529 108.407

CAGE analysis