Hb_002835_360

Information

Type transcription factor
Description TF Family: MYB
Location Contig2835: 322833-324251
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09430g
description POPTRDRAFT_575224; hypothetical protein
nr
ID XP_002321627.1
description hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
swissprot
ID Q8LPH6
description Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1
trembl
ID B9IEX5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s09430g PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein odorant1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29663: 324289-324392
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_360 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
2 Hb_002078_180 0.0396231631 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
3 Hb_005686_040 0.0448105573 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009476_080 0.0556828176 - - BnaA03g18920D [Brassica napus]
5 Hb_003747_160 0.0581745526 - - conserved hypothetical protein [Ricinus communis]
6 Hb_015807_090 0.0592963994 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
7 Hb_001051_060 0.0657661565 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
8 Hb_001377_220 0.0661615225 - - dopamine beta-monooxygenase, putative [Ricinus communis]
9 Hb_000086_490 0.0664730982 - - cellulose synthase [Populus tomentosa]
10 Hb_001935_060 0.0697713409 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
11 Hb_002662_070 0.0700733731 - - hypothetical protein JCGZ_16102 [Jatropha curcas]
12 Hb_001511_220 0.0705566033 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
13 Hb_000173_240 0.0708932363 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005523_030 0.0754236916 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
15 Hb_000193_320 0.0828767932 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000347_060 0.0831874866 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
17 Hb_011224_070 0.0842927393 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
18 Hb_000328_030 0.0860784664 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
19 Hb_003090_190 0.0872250638 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
20 Hb_010166_010 0.0876598865 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]

Gene co-expression network

sample Hb_002835_360 Hb_002835_360 Hb_002078_180 Hb_002078_180 Hb_002835_360--Hb_002078_180 Hb_005686_040 Hb_005686_040 Hb_002835_360--Hb_005686_040 Hb_009476_080 Hb_009476_080 Hb_002835_360--Hb_009476_080 Hb_003747_160 Hb_003747_160 Hb_002835_360--Hb_003747_160 Hb_015807_090 Hb_015807_090 Hb_002835_360--Hb_015807_090 Hb_001051_060 Hb_001051_060 Hb_002835_360--Hb_001051_060 Hb_002078_180--Hb_005686_040 Hb_002078_180--Hb_015807_090 Hb_000086_490 Hb_000086_490 Hb_002078_180--Hb_000086_490 Hb_002078_180--Hb_009476_080 Hb_001935_060 Hb_001935_060 Hb_002078_180--Hb_001935_060 Hb_005686_040--Hb_001051_060 Hb_005686_040--Hb_000086_490 Hb_005523_030 Hb_005523_030 Hb_005686_040--Hb_005523_030 Hb_005686_040--Hb_015807_090 Hb_009476_080--Hb_015807_090 Hb_009476_080--Hb_003747_160 Hb_009476_080--Hb_005686_040 Hb_009476_080--Hb_001051_060 Hb_003747_160--Hb_001051_060 Hb_003747_160--Hb_015807_090 Hb_011224_070 Hb_011224_070 Hb_003747_160--Hb_011224_070 Hb_003747_160--Hb_005686_040 Hb_004225_120 Hb_004225_120 Hb_003747_160--Hb_004225_120 Hb_015807_090--Hb_000086_490 Hb_015807_090--Hb_005523_030 Hb_015807_090--Hb_001051_060 Hb_001051_060--Hb_000086_490 Hb_001051_060--Hb_005523_030 Hb_001051_060--Hb_002078_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0345053 1.01278 1.97367 18.9706 0.0172955 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0787842 0 0 0.173704 12.458

CAGE analysis