Hb_011224_070

Information

Type -
Description -
Location Contig11224: 33386-37157
Sequence    

Annotation

kegg
ID rcu:RCOM_0523300
description organic anion transporter, putative
nr
ID XP_012071070.1
description PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
swissprot
ID Q1JQ66
description Solute carrier family 35 member E3 OS=Danio rerio GN=slc35e3 PE=2 SV=1
trembl
ID B9S9X6
description Organic anion transporter, putative OS=Ricinus communis GN=RCOM_0523300 PE=4 SV=1
Gene Ontology
ID GO:0016020
description uncharacterized membrane protein at1g06890-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03690: 36007-36475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011224_070 0.0 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
2 Hb_003747_160 0.0499997567 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003376_060 0.0517038722 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
4 Hb_004225_120 0.0535829146 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
5 Hb_001511_220 0.0625747603 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
6 Hb_001096_010 0.0635086786 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
7 Hb_005614_020 0.0659464585 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
8 Hb_135052_010 0.0677833889 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_001104_060 0.0690953282 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
10 Hb_002499_030 0.0699182268 - - receptor-kinase, putative [Ricinus communis]
11 Hb_001269_160 0.0714559808 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001051_060 0.0762449837 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
13 Hb_009476_080 0.0771482859 - - BnaA03g18920D [Brassica napus]
14 Hb_070771_010 0.0806038851 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
15 Hb_015807_090 0.0813306371 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
16 Hb_000413_030 0.082126357 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
17 Hb_001456_030 0.0823422322 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
18 Hb_002835_360 0.0842927393 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
19 Hb_000339_060 0.0874491425 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
20 Hb_005686_040 0.0896274584 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011224_070 Hb_011224_070 Hb_003747_160 Hb_003747_160 Hb_011224_070--Hb_003747_160 Hb_003376_060 Hb_003376_060 Hb_011224_070--Hb_003376_060 Hb_004225_120 Hb_004225_120 Hb_011224_070--Hb_004225_120 Hb_001511_220 Hb_001511_220 Hb_011224_070--Hb_001511_220 Hb_001096_010 Hb_001096_010 Hb_011224_070--Hb_001096_010 Hb_005614_020 Hb_005614_020 Hb_011224_070--Hb_005614_020 Hb_001051_060 Hb_001051_060 Hb_003747_160--Hb_001051_060 Hb_015807_090 Hb_015807_090 Hb_003747_160--Hb_015807_090 Hb_005686_040 Hb_005686_040 Hb_003747_160--Hb_005686_040 Hb_009476_080 Hb_009476_080 Hb_003747_160--Hb_009476_080 Hb_003747_160--Hb_004225_120 Hb_001456_030 Hb_001456_030 Hb_003376_060--Hb_001456_030 Hb_005616_020 Hb_005616_020 Hb_003376_060--Hb_005616_020 Hb_000964_080 Hb_000964_080 Hb_003376_060--Hb_000964_080 Hb_000413_030 Hb_000413_030 Hb_003376_060--Hb_000413_030 Hb_003376_060--Hb_003747_160 Hb_004225_120--Hb_003376_060 Hb_004225_120--Hb_005614_020 Hb_070771_010 Hb_070771_010 Hb_004225_120--Hb_070771_010 Hb_004225_120--Hb_001051_060 Hb_001511_220--Hb_003747_160 Hb_001511_220--Hb_009476_080 Hb_004650_120 Hb_004650_120 Hb_001511_220--Hb_004650_120 Hb_002835_360 Hb_002835_360 Hb_001511_220--Hb_002835_360 Hb_002499_030 Hb_002499_030 Hb_001511_220--Hb_002499_030 Hb_001096_010--Hb_002499_030 Hb_001096_010--Hb_005614_020 Hb_001096_010--Hb_003747_160 Hb_001096_010--Hb_001511_220 Hb_001195_710 Hb_001195_710 Hb_001096_010--Hb_001195_710 Hb_005614_020--Hb_003747_160 Hb_005614_020--Hb_002499_030 Hb_005614_020--Hb_015807_090 Hb_042083_010 Hb_042083_010 Hb_005614_020--Hb_042083_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0593766 1.12307 2.10131 20.0047 0.0342658 0.0578964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.158048 9.23676

CAGE analysis