Hb_000413_030

Information

Type -
Description -
Location Contig413: 18176-20533
Sequence    

Annotation

kegg
ID rcu:RCOM_0906830
description Flavoprotein wrbA, putative
nr
ID XP_012091444.1
description PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
swissprot
ID Q6NQE2
description Probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 OS=Arabidopsis thaliana GN=At4g27270 PE=2 SV=1
trembl
ID A0A067JAK1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21312 PE=3 SV=1
Gene Ontology
ID GO:0003960
description minor allergen alt a 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40917: 16853-20446
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_030 0.0 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
2 Hb_011912_010 0.0401312083 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
3 Hb_064047_020 0.0497042172 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
4 Hb_000964_080 0.0515592145 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
5 Hb_003376_060 0.0571228838 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
6 Hb_000037_150 0.0613716371 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
7 Hb_001307_180 0.0629739538 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
8 Hb_070771_010 0.0648417136 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
9 Hb_001269_160 0.0652163059 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005616_020 0.0662974681 - - kinase, putative [Ricinus communis]
11 Hb_004846_110 0.073099321 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
12 Hb_001051_060 0.0743956148 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
13 Hb_001456_030 0.0749967246 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
14 Hb_003747_160 0.0753397873 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002499_030 0.0756984619 - - receptor-kinase, putative [Ricinus communis]
16 Hb_002750_030 0.0764583949 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
17 Hb_005056_040 0.0769023605 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
18 Hb_009476_080 0.0777815723 - - BnaA03g18920D [Brassica napus]
19 Hb_002085_060 0.0786773388 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001477_050 0.0805795786 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000413_030 Hb_000413_030 Hb_011912_010 Hb_011912_010 Hb_000413_030--Hb_011912_010 Hb_064047_020 Hb_064047_020 Hb_000413_030--Hb_064047_020 Hb_000964_080 Hb_000964_080 Hb_000413_030--Hb_000964_080 Hb_003376_060 Hb_003376_060 Hb_000413_030--Hb_003376_060 Hb_000037_150 Hb_000037_150 Hb_000413_030--Hb_000037_150 Hb_001307_180 Hb_001307_180 Hb_000413_030--Hb_001307_180 Hb_011912_010--Hb_001307_180 Hb_070771_010 Hb_070771_010 Hb_011912_010--Hb_070771_010 Hb_011912_010--Hb_000037_150 Hb_003645_040 Hb_003645_040 Hb_011912_010--Hb_003645_040 Hb_011912_010--Hb_064047_020 Hb_002085_060 Hb_002085_060 Hb_064047_020--Hb_002085_060 Hb_002750_030 Hb_002750_030 Hb_064047_020--Hb_002750_030 Hb_064047_020--Hb_003645_040 Hb_064047_020--Hb_070771_010 Hb_000964_080--Hb_003376_060 Hb_004846_110 Hb_004846_110 Hb_000964_080--Hb_004846_110 Hb_000964_080--Hb_011912_010 Hb_000964_080--Hb_000037_150 Hb_001158_170 Hb_001158_170 Hb_000964_080--Hb_001158_170 Hb_001456_030 Hb_001456_030 Hb_003376_060--Hb_001456_030 Hb_011224_070 Hb_011224_070 Hb_003376_060--Hb_011224_070 Hb_005616_020 Hb_005616_020 Hb_003376_060--Hb_005616_020 Hb_003747_160 Hb_003747_160 Hb_003376_060--Hb_003747_160 Hb_002660_180 Hb_002660_180 Hb_000037_150--Hb_002660_180 Hb_024074_030 Hb_024074_030 Hb_000037_150--Hb_024074_030 Hb_001477_050 Hb_001477_050 Hb_000037_150--Hb_001477_050 Hb_000037_150--Hb_004846_110 Hb_000696_130 Hb_000696_130 Hb_000037_150--Hb_000696_130 Hb_001307_180--Hb_003645_040 Hb_012633_020 Hb_012633_020 Hb_001307_180--Hb_012633_020 Hb_001307_180--Hb_070771_010 Hb_001307_180--Hb_002660_180 Hb_000836_640 Hb_000836_640 Hb_001307_180--Hb_000836_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.103537 4.40461 9.42622 171.629 0.192647 0.10588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.24985 74.5165

CAGE analysis