Hb_000696_130

Information

Type -
Description -
Location Contig696: 77132-77527
Sequence    

Annotation

kegg
ID rcu:RCOM_0362110
description nucleic acid binding protein, putative
nr
ID XP_002531146.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q6ZSG1
description RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
trembl
ID B9SYS7
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0362110 PE=4 SV=1
Gene Ontology
ID GO:0005515
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54584: 77256-77466
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_130 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_002636_170 0.0250470763 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
3 Hb_002660_180 0.0373076201 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000422_090 0.0480762551 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000037_150 0.0599914795 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
6 Hb_024074_030 0.0601590575 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
7 Hb_019953_010 0.0713508369 - - hypothetical protein CICLE_v10019877mg [Citrus clementina]
8 Hb_011912_010 0.0719627447 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
9 Hb_003788_030 0.0735127478 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
10 Hb_001307_180 0.0748573776 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
11 Hb_000594_010 0.0776739775 - - PREDICTED: lysine histidine transporter-like 6 isoform X3 [Populus euphratica]
12 Hb_001477_050 0.081216414 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
13 Hb_004846_110 0.0835004824 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
14 Hb_003645_040 0.0886109371 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
15 Hb_000684_190 0.0886287877 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
16 Hb_005056_040 0.0911879127 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
17 Hb_000581_010 0.0928030175 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
18 Hb_000487_350 0.0947279636 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001935_200 0.0955337456 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
20 Hb_002785_020 0.0985231351 - - PREDICTED: laccase-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000696_130 Hb_000696_130 Hb_002636_170 Hb_002636_170 Hb_000696_130--Hb_002636_170 Hb_002660_180 Hb_002660_180 Hb_000696_130--Hb_002660_180 Hb_000422_090 Hb_000422_090 Hb_000696_130--Hb_000422_090 Hb_000037_150 Hb_000037_150 Hb_000696_130--Hb_000037_150 Hb_024074_030 Hb_024074_030 Hb_000696_130--Hb_024074_030 Hb_019953_010 Hb_019953_010 Hb_000696_130--Hb_019953_010 Hb_002636_170--Hb_000422_090 Hb_002636_170--Hb_002660_180 Hb_002636_170--Hb_019953_010 Hb_002636_170--Hb_000037_150 Hb_002636_170--Hb_024074_030 Hb_002660_180--Hb_024074_030 Hb_002660_180--Hb_000037_150 Hb_001307_180 Hb_001307_180 Hb_002660_180--Hb_001307_180 Hb_002660_180--Hb_000422_090 Hb_000684_190 Hb_000684_190 Hb_000422_090--Hb_000684_190 Hb_002734_020 Hb_002734_020 Hb_000422_090--Hb_002734_020 Hb_001856_250 Hb_001856_250 Hb_000422_090--Hb_001856_250 Hb_011912_010 Hb_011912_010 Hb_000037_150--Hb_011912_010 Hb_000037_150--Hb_024074_030 Hb_001477_050 Hb_001477_050 Hb_000037_150--Hb_001477_050 Hb_004846_110 Hb_004846_110 Hb_000037_150--Hb_004846_110 Hb_024074_030--Hb_001477_050 Hb_024074_030--Hb_001307_180 Hb_033149_010 Hb_033149_010 Hb_019953_010--Hb_033149_010 Hb_000594_010 Hb_000594_010 Hb_019953_010--Hb_000594_010 Hb_006634_120 Hb_006634_120 Hb_019953_010--Hb_006634_120 Hb_019953_010--Hb_000422_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.171341 2.98191 4.71489 288.306 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.61667 105.104

CAGE analysis