Hb_024074_030

Information

Type -
Description -
Location Contig24074: 23669-24547
Sequence    

Annotation

kegg
ID cit:102615379
description glucuronoxylan 4-O-methyltransferase 1-like
nr
ID KDO42443.1
description hypothetical protein CISIN_1g043166mg [Citrus sinensis]
swissprot
ID Q6NMK1
description Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana GN=GXM1 PE=1 SV=1
trembl
ID A0A067DHU4
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043166mg PE=4 SV=1
Gene Ontology
ID GO:0008168
description glucuronoxylan 4-o-methyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25234: 23682-23819
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024074_030 0.0 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
2 Hb_002660_180 0.0501321326 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000037_150 0.0561672639 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
4 Hb_001477_050 0.0561935645 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
5 Hb_000696_130 0.0601590575 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_002636_170 0.0671152487 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
7 Hb_001307_180 0.0705094567 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
8 Hb_005056_040 0.0709291906 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
9 Hb_000836_640 0.0720614634 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
10 Hb_011912_010 0.0735398163 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
11 Hb_006634_120 0.0761809461 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
12 Hb_000162_010 0.0879007312 - - PREDICTED: dirigent protein 23 [Jatropha curcas]
13 Hb_000422_090 0.0886966646 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004846_110 0.0887021257 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
15 Hb_002750_030 0.0896170146 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
16 Hb_019953_010 0.0928683482 - - hypothetical protein CICLE_v10019877mg [Citrus clementina]
17 Hb_000413_030 0.0964589918 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
18 Hb_003645_040 0.0971377396 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
19 Hb_010288_010 0.1003216743 - - Beta-glucosidase, putative [Ricinus communis]
20 Hb_064445_040 0.1005773236 - - hypothetical protein POPTR_0005s09430g [Populus trichocarpa]

Gene co-expression network

sample Hb_024074_030 Hb_024074_030 Hb_002660_180 Hb_002660_180 Hb_024074_030--Hb_002660_180 Hb_000037_150 Hb_000037_150 Hb_024074_030--Hb_000037_150 Hb_001477_050 Hb_001477_050 Hb_024074_030--Hb_001477_050 Hb_000696_130 Hb_000696_130 Hb_024074_030--Hb_000696_130 Hb_002636_170 Hb_002636_170 Hb_024074_030--Hb_002636_170 Hb_001307_180 Hb_001307_180 Hb_024074_030--Hb_001307_180 Hb_002660_180--Hb_000696_130 Hb_002660_180--Hb_002636_170 Hb_002660_180--Hb_000037_150 Hb_002660_180--Hb_001307_180 Hb_000422_090 Hb_000422_090 Hb_002660_180--Hb_000422_090 Hb_011912_010 Hb_011912_010 Hb_000037_150--Hb_011912_010 Hb_000037_150--Hb_001477_050 Hb_004846_110 Hb_004846_110 Hb_000037_150--Hb_004846_110 Hb_000037_150--Hb_000696_130 Hb_005056_040 Hb_005056_040 Hb_001477_050--Hb_005056_040 Hb_000836_640 Hb_000836_640 Hb_001477_050--Hb_000836_640 Hb_002750_030 Hb_002750_030 Hb_001477_050--Hb_002750_030 Hb_000162_010 Hb_000162_010 Hb_001477_050--Hb_000162_010 Hb_000696_130--Hb_002636_170 Hb_000696_130--Hb_000422_090 Hb_019953_010 Hb_019953_010 Hb_000696_130--Hb_019953_010 Hb_002636_170--Hb_000422_090 Hb_002636_170--Hb_019953_010 Hb_002636_170--Hb_000037_150 Hb_001307_180--Hb_011912_010 Hb_003645_040 Hb_003645_040 Hb_001307_180--Hb_003645_040 Hb_012633_020 Hb_012633_020 Hb_001307_180--Hb_012633_020 Hb_070771_010 Hb_070771_010 Hb_001307_180--Hb_070771_010 Hb_001307_180--Hb_000836_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0325807 2.5701 4.63606 261.564 0.125278 0.210919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.537013 0.0938448 0.171128 0.85208 120.675

CAGE analysis