Hb_012633_020

Information

Type -
Description -
Location Contig12633: 27841-30429
Sequence    

Annotation

kegg
ID rcu:RCOM_0452260
description laccase, putative (EC:1.10.3.3)
nr
ID XP_002531565.1
description laccase, putative [Ricinus communis]
swissprot
ID Q9FJD5
description Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 SV=1
trembl
ID B9SZZ6
description Laccase OS=Ricinus communis GN=RCOM_0452260 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase-17-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07967: 27886-30540
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012633_020 0.0 - - laccase, putative [Ricinus communis]
2 Hb_001307_180 0.0480273494 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
3 Hb_003645_040 0.0520008592 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
4 Hb_070771_010 0.0559091959 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
5 Hb_006065_030 0.0619821427 - - PREDICTED: filament-like plant protein 7 isoform X1 [Jatropha curcas]
6 Hb_011912_010 0.0633665785 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
7 Hb_042083_010 0.0638588797 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
8 Hb_000836_640 0.0640728933 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
9 Hb_001051_060 0.0646787518 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
10 Hb_005523_030 0.0667934185 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
11 Hb_000086_490 0.070210411 - - cellulose synthase [Populus tomentosa]
12 Hb_001189_080 0.0727892384 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002085_060 0.0730035396 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002750_030 0.074322088 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
15 Hb_015807_090 0.0762784211 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
16 Hb_000776_090 0.0773289499 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
17 Hb_003747_160 0.0795208327 - - conserved hypothetical protein [Ricinus communis]
18 Hb_064047_020 0.0811276368 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
19 Hb_005686_040 0.0822241927 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002660_180 0.0847167664 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012633_020 Hb_012633_020 Hb_001307_180 Hb_001307_180 Hb_012633_020--Hb_001307_180 Hb_003645_040 Hb_003645_040 Hb_012633_020--Hb_003645_040 Hb_070771_010 Hb_070771_010 Hb_012633_020--Hb_070771_010 Hb_006065_030 Hb_006065_030 Hb_012633_020--Hb_006065_030 Hb_011912_010 Hb_011912_010 Hb_012633_020--Hb_011912_010 Hb_042083_010 Hb_042083_010 Hb_012633_020--Hb_042083_010 Hb_001307_180--Hb_011912_010 Hb_001307_180--Hb_003645_040 Hb_001307_180--Hb_070771_010 Hb_002660_180 Hb_002660_180 Hb_001307_180--Hb_002660_180 Hb_000836_640 Hb_000836_640 Hb_001307_180--Hb_000836_640 Hb_002085_060 Hb_002085_060 Hb_003645_040--Hb_002085_060 Hb_003645_040--Hb_011912_010 Hb_003645_040--Hb_070771_010 Hb_064047_020 Hb_064047_020 Hb_003645_040--Hb_064047_020 Hb_070771_010--Hb_002085_060 Hb_000339_060 Hb_000339_060 Hb_070771_010--Hb_000339_060 Hb_070771_010--Hb_011912_010 Hb_003638_020 Hb_003638_020 Hb_070771_010--Hb_003638_020 Hb_006065_030--Hb_042083_010 Hb_015807_090 Hb_015807_090 Hb_006065_030--Hb_015807_090 Hb_002750_030 Hb_002750_030 Hb_006065_030--Hb_002750_030 Hb_005523_030 Hb_005523_030 Hb_006065_030--Hb_005523_030 Hb_000086_490 Hb_000086_490 Hb_006065_030--Hb_000086_490 Hb_000413_030 Hb_000413_030 Hb_011912_010--Hb_000413_030 Hb_000037_150 Hb_000037_150 Hb_011912_010--Hb_000037_150 Hb_011912_010--Hb_064047_020 Hb_042083_010--Hb_015807_090 Hb_042083_010--Hb_000086_490 Hb_000328_030 Hb_000328_030 Hb_042083_010--Hb_000328_030 Hb_042083_010--Hb_005523_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0868633 10.4739 5.74465 187.961 0.416313 0.0622408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.216585 92.5973

CAGE analysis