Hb_000339_060

Information

Type -
Description -
Location Contig339: 135013-139764
Sequence    

Annotation

kegg
ID pop:POPTR_0011s07160g
description POPTRDRAFT_728166; hypothetical protein
nr
ID XP_012091800.1
description PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID B9I1J6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s07160g PE=4 SV=2
Gene Ontology
ID GO:0016757
description o-fucosyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35428: 135091-135901 , PASA_asmbl_35430: 136254-138694 , PASA_asmbl_35432: 139717-139832
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000339_060 0.0 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
2 Hb_003638_020 0.0273385463 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
3 Hb_002085_060 0.0317683322 - - conserved hypothetical protein [Ricinus communis]
4 Hb_070771_010 0.0470586639 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
5 Hb_002499_030 0.0667697547 - - receptor-kinase, putative [Ricinus communis]
6 Hb_071079_040 0.0696067509 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
7 Hb_000684_190 0.0729662332 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
8 Hb_000645_230 0.0733809599 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
9 Hb_003645_040 0.0737586376 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
10 Hb_005614_020 0.0765968395 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
11 Hb_064047_020 0.0790332057 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
12 Hb_011912_010 0.0831562986 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
13 Hb_001722_110 0.0841237332 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
14 Hb_000413_030 0.085570358 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
15 Hb_004225_120 0.0858562542 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
16 Hb_011224_070 0.0874491425 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
17 Hb_001307_180 0.0878605384 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
18 Hb_001096_010 0.0879800016 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
19 Hb_005616_020 0.089874399 - - kinase, putative [Ricinus communis]
20 Hb_003376_060 0.0922786045 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000339_060 Hb_000339_060 Hb_003638_020 Hb_003638_020 Hb_000339_060--Hb_003638_020 Hb_002085_060 Hb_002085_060 Hb_000339_060--Hb_002085_060 Hb_070771_010 Hb_070771_010 Hb_000339_060--Hb_070771_010 Hb_002499_030 Hb_002499_030 Hb_000339_060--Hb_002499_030 Hb_071079_040 Hb_071079_040 Hb_000339_060--Hb_071079_040 Hb_000684_190 Hb_000684_190 Hb_000339_060--Hb_000684_190 Hb_003638_020--Hb_002085_060 Hb_003638_020--Hb_070771_010 Hb_003638_020--Hb_002499_030 Hb_001722_110 Hb_001722_110 Hb_003638_020--Hb_001722_110 Hb_005614_020 Hb_005614_020 Hb_003638_020--Hb_005614_020 Hb_002085_060--Hb_070771_010 Hb_003645_040 Hb_003645_040 Hb_002085_060--Hb_003645_040 Hb_064047_020 Hb_064047_020 Hb_002085_060--Hb_064047_020 Hb_002085_060--Hb_002499_030 Hb_001307_180 Hb_001307_180 Hb_070771_010--Hb_001307_180 Hb_011912_010 Hb_011912_010 Hb_070771_010--Hb_011912_010 Hb_070771_010--Hb_003645_040 Hb_001096_010 Hb_001096_010 Hb_002499_030--Hb_001096_010 Hb_002499_030--Hb_005614_020 Hb_002499_030--Hb_070771_010 Hb_003747_160 Hb_003747_160 Hb_002499_030--Hb_003747_160 Hb_001269_160 Hb_001269_160 Hb_002499_030--Hb_001269_160 Hb_000497_030 Hb_000497_030 Hb_071079_040--Hb_000497_030 Hb_000699_220 Hb_000699_220 Hb_071079_040--Hb_000699_220 Hb_031330_010 Hb_031330_010 Hb_071079_040--Hb_031330_010 Hb_000645_230 Hb_000645_230 Hb_071079_040--Hb_000645_230 Hb_006717_060 Hb_006717_060 Hb_071079_040--Hb_006717_060 Hb_000684_190--Hb_000645_230 Hb_002785_020 Hb_002785_020 Hb_000684_190--Hb_002785_020 Hb_001935_200 Hb_001935_200 Hb_000684_190--Hb_001935_200 Hb_000422_090 Hb_000422_090 Hb_000684_190--Hb_000422_090 Hb_004884_040 Hb_004884_040 Hb_000684_190--Hb_004884_040 Hb_002734_020 Hb_002734_020 Hb_000684_190--Hb_002734_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0379947 3.58481 2.92329 55.6706 0.0736921 0.016075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.397569 18.6549

CAGE analysis