Hb_003638_020

Information

Type -
Description -
Location Contig3638: 36644-42672
Sequence    

Annotation

kegg
ID rcu:RCOM_1686830
description hypothetical protein
nr
ID XP_012086899.1
description PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20591 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37397: 39377-39721
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003638_020 0.0 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
2 Hb_000339_060 0.0273385463 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
3 Hb_002085_060 0.0375889541 - - conserved hypothetical protein [Ricinus communis]
4 Hb_070771_010 0.0548117079 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
5 Hb_002499_030 0.0623807325 - - receptor-kinase, putative [Ricinus communis]
6 Hb_001722_110 0.078167662 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
7 Hb_005614_020 0.0800249019 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
8 Hb_001096_010 0.0811580062 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
9 Hb_064047_020 0.0817536296 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
10 Hb_000684_190 0.0818080641 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
11 Hb_003645_040 0.0821869366 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
12 Hb_071079_040 0.0832527282 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
13 Hb_000645_230 0.0848518152 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
14 Hb_011912_010 0.0894972289 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
15 Hb_000413_030 0.0927848284 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
16 Hb_001307_180 0.0930393981 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
17 Hb_011224_070 0.09411346 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
18 Hb_004225_120 0.0961585754 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
19 Hb_005616_020 0.097703309 - - kinase, putative [Ricinus communis]
20 Hb_003747_160 0.0981677559 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003638_020 Hb_003638_020 Hb_000339_060 Hb_000339_060 Hb_003638_020--Hb_000339_060 Hb_002085_060 Hb_002085_060 Hb_003638_020--Hb_002085_060 Hb_070771_010 Hb_070771_010 Hb_003638_020--Hb_070771_010 Hb_002499_030 Hb_002499_030 Hb_003638_020--Hb_002499_030 Hb_001722_110 Hb_001722_110 Hb_003638_020--Hb_001722_110 Hb_005614_020 Hb_005614_020 Hb_003638_020--Hb_005614_020 Hb_000339_060--Hb_002085_060 Hb_000339_060--Hb_070771_010 Hb_000339_060--Hb_002499_030 Hb_071079_040 Hb_071079_040 Hb_000339_060--Hb_071079_040 Hb_000684_190 Hb_000684_190 Hb_000339_060--Hb_000684_190 Hb_002085_060--Hb_070771_010 Hb_003645_040 Hb_003645_040 Hb_002085_060--Hb_003645_040 Hb_064047_020 Hb_064047_020 Hb_002085_060--Hb_064047_020 Hb_002085_060--Hb_002499_030 Hb_001307_180 Hb_001307_180 Hb_070771_010--Hb_001307_180 Hb_011912_010 Hb_011912_010 Hb_070771_010--Hb_011912_010 Hb_070771_010--Hb_003645_040 Hb_001096_010 Hb_001096_010 Hb_002499_030--Hb_001096_010 Hb_002499_030--Hb_005614_020 Hb_002499_030--Hb_070771_010 Hb_003747_160 Hb_003747_160 Hb_002499_030--Hb_003747_160 Hb_001269_160 Hb_001269_160 Hb_002499_030--Hb_001269_160 Hb_004158_040 Hb_004158_040 Hb_001722_110--Hb_004158_040 Hb_001579_160 Hb_001579_160 Hb_001722_110--Hb_001579_160 Hb_001454_350 Hb_001454_350 Hb_001722_110--Hb_001454_350 Hb_005588_050 Hb_005588_050 Hb_001722_110--Hb_005588_050 Hb_001722_110--Hb_000339_060 Hb_005614_020--Hb_003747_160 Hb_011224_070 Hb_011224_070 Hb_005614_020--Hb_011224_070 Hb_015807_090 Hb_015807_090 Hb_005614_020--Hb_015807_090 Hb_004225_120 Hb_004225_120 Hb_005614_020--Hb_004225_120 Hb_042083_010 Hb_042083_010 Hb_005614_020--Hb_042083_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00669426 0.305477 0.218342 4.3495 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0379199 1.47732

CAGE analysis