Hb_005614_020

Information

Type -
Description -
Location Contig5614: 5415-6885
Sequence    

Annotation

kegg
ID rcu:RCOM_1230910
description sugar binding protein, putative
nr
ID XP_012089720.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
swissprot
ID Q8RWZ5
description G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1
trembl
ID A0A067JFW9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00383 PE=4 SV=1
Gene Ontology
ID GO:0016301
description pan domain-containing protein at5g03700

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48799: 5993-6340 , PASA_asmbl_48800: 6742-7000
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005614_020 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
2 Hb_003747_160 0.0591361847 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002499_030 0.0601871553 - - receptor-kinase, putative [Ricinus communis]
4 Hb_011224_070 0.0659464585 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
5 Hb_015807_090 0.0687957554 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
6 Hb_004225_120 0.0706753741 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
7 Hb_042083_010 0.0720332765 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
8 Hb_001096_010 0.073425949 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
9 Hb_070771_010 0.0752156973 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
10 Hb_002085_060 0.0759243914 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000339_060 0.0765968395 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_003638_020 0.0800249019 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
13 Hb_000245_110 0.0807922644 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
14 Hb_001511_220 0.0808207474 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
15 Hb_002171_050 0.0833008822 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
16 Hb_135052_010 0.0839650845 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
17 Hb_001051_060 0.0852010614 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
18 Hb_009476_080 0.0871861325 - - BnaA03g18920D [Brassica napus]
19 Hb_012633_020 0.0886319386 - - laccase, putative [Ricinus communis]
20 Hb_000086_490 0.0900239507 - - cellulose synthase [Populus tomentosa]

Gene co-expression network

sample Hb_005614_020 Hb_005614_020 Hb_003747_160 Hb_003747_160 Hb_005614_020--Hb_003747_160 Hb_002499_030 Hb_002499_030 Hb_005614_020--Hb_002499_030 Hb_011224_070 Hb_011224_070 Hb_005614_020--Hb_011224_070 Hb_015807_090 Hb_015807_090 Hb_005614_020--Hb_015807_090 Hb_004225_120 Hb_004225_120 Hb_005614_020--Hb_004225_120 Hb_042083_010 Hb_042083_010 Hb_005614_020--Hb_042083_010 Hb_001051_060 Hb_001051_060 Hb_003747_160--Hb_001051_060 Hb_003747_160--Hb_015807_090 Hb_003747_160--Hb_011224_070 Hb_005686_040 Hb_005686_040 Hb_003747_160--Hb_005686_040 Hb_009476_080 Hb_009476_080 Hb_003747_160--Hb_009476_080 Hb_003747_160--Hb_004225_120 Hb_001096_010 Hb_001096_010 Hb_002499_030--Hb_001096_010 Hb_070771_010 Hb_070771_010 Hb_002499_030--Hb_070771_010 Hb_002499_030--Hb_003747_160 Hb_003638_020 Hb_003638_020 Hb_002499_030--Hb_003638_020 Hb_001269_160 Hb_001269_160 Hb_002499_030--Hb_001269_160 Hb_003376_060 Hb_003376_060 Hb_011224_070--Hb_003376_060 Hb_011224_070--Hb_004225_120 Hb_001511_220 Hb_001511_220 Hb_011224_070--Hb_001511_220 Hb_011224_070--Hb_001096_010 Hb_000086_490 Hb_000086_490 Hb_015807_090--Hb_000086_490 Hb_005523_030 Hb_005523_030 Hb_015807_090--Hb_005523_030 Hb_002078_180 Hb_002078_180 Hb_015807_090--Hb_002078_180 Hb_015807_090--Hb_001051_060 Hb_015807_090--Hb_005686_040 Hb_004225_120--Hb_003376_060 Hb_004225_120--Hb_070771_010 Hb_004225_120--Hb_001051_060 Hb_042083_010--Hb_015807_090 Hb_042083_010--Hb_000086_490 Hb_000328_030 Hb_000328_030 Hb_042083_010--Hb_000328_030 Hb_006065_030 Hb_006065_030 Hb_042083_010--Hb_006065_030 Hb_042083_010--Hb_005523_030 Hb_012633_020 Hb_012633_020 Hb_042083_010--Hb_012633_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0150857 0.720884 0.59244 7.88832 0.0423899 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0648856 3.77897

CAGE analysis