Hb_006065_030

Information

Type -
Description -
Location Contig6065: 49550-55678
Sequence    

Annotation

kegg
ID rcu:RCOM_1410590
description Myosin-9, putative
nr
ID XP_012079265.1
description PREDICTED: filament-like plant protein 7 isoform X1 [Jatropha curcas]
swissprot
ID Q9SLN1
description Filament-like plant protein 7 OS=Arabidopsis thaliana GN=FPP7 PE=3 SV=2
trembl
ID A0A067K776
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12428 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006065_030 0.0 - - PREDICTED: filament-like plant protein 7 isoform X1 [Jatropha curcas]
2 Hb_042083_010 0.0570850316 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
3 Hb_012633_020 0.0619821427 - - laccase, putative [Ricinus communis]
4 Hb_015807_090 0.0741150594 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
5 Hb_002750_030 0.0745617431 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
6 Hb_005523_030 0.0753505668 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
7 Hb_000086_490 0.0761149318 - - cellulose synthase [Populus tomentosa]
8 Hb_001307_180 0.0799124911 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
9 Hb_000836_640 0.080510789 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
10 Hb_003645_040 0.0820498581 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
11 Hb_000162_010 0.0827932253 - - PREDICTED: dirigent protein 23 [Jatropha curcas]
12 Hb_070771_010 0.0837090202 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
13 Hb_001051_060 0.084640405 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
14 Hb_000776_090 0.0847856468 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
15 Hb_000193_320 0.0850873067 - - conserved hypothetical protein [Ricinus communis]
16 Hb_064047_020 0.086397883 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
17 Hb_002085_060 0.0887863993 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003747_160 0.091209684 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011912_010 0.091220762 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
20 Hb_000328_030 0.092003106 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]

Gene co-expression network

sample Hb_006065_030 Hb_006065_030 Hb_042083_010 Hb_042083_010 Hb_006065_030--Hb_042083_010 Hb_012633_020 Hb_012633_020 Hb_006065_030--Hb_012633_020 Hb_015807_090 Hb_015807_090 Hb_006065_030--Hb_015807_090 Hb_002750_030 Hb_002750_030 Hb_006065_030--Hb_002750_030 Hb_005523_030 Hb_005523_030 Hb_006065_030--Hb_005523_030 Hb_000086_490 Hb_000086_490 Hb_006065_030--Hb_000086_490 Hb_042083_010--Hb_015807_090 Hb_042083_010--Hb_000086_490 Hb_000328_030 Hb_000328_030 Hb_042083_010--Hb_000328_030 Hb_042083_010--Hb_005523_030 Hb_042083_010--Hb_012633_020 Hb_001307_180 Hb_001307_180 Hb_012633_020--Hb_001307_180 Hb_003645_040 Hb_003645_040 Hb_012633_020--Hb_003645_040 Hb_070771_010 Hb_070771_010 Hb_012633_020--Hb_070771_010 Hb_011912_010 Hb_011912_010 Hb_012633_020--Hb_011912_010 Hb_015807_090--Hb_000086_490 Hb_015807_090--Hb_005523_030 Hb_003747_160 Hb_003747_160 Hb_015807_090--Hb_003747_160 Hb_002078_180 Hb_002078_180 Hb_015807_090--Hb_002078_180 Hb_001051_060 Hb_001051_060 Hb_015807_090--Hb_001051_060 Hb_005686_040 Hb_005686_040 Hb_015807_090--Hb_005686_040 Hb_000836_640 Hb_000836_640 Hb_002750_030--Hb_000836_640 Hb_000162_010 Hb_000162_010 Hb_002750_030--Hb_000162_010 Hb_001477_050 Hb_001477_050 Hb_002750_030--Hb_001477_050 Hb_005056_040 Hb_005056_040 Hb_002750_030--Hb_005056_040 Hb_001500_090 Hb_001500_090 Hb_002750_030--Hb_001500_090 Hb_064047_020 Hb_064047_020 Hb_002750_030--Hb_064047_020 Hb_005523_030--Hb_000086_490 Hb_005523_030--Hb_001051_060 Hb_005523_030--Hb_005686_040 Hb_000776_090 Hb_000776_090 Hb_005523_030--Hb_000776_090 Hb_005523_030--Hb_002078_180 Hb_000086_490--Hb_005686_040 Hb_000086_490--Hb_001051_060 Hb_000086_490--Hb_000328_030 Hb_000086_490--Hb_002078_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.015384 1.89423 0.718594 26.214 0.0195265 0.0997763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.105277 0.177511 14.2123

CAGE analysis