Hb_002750_030

Information

Type -
Description -
Location Contig2750: 15295-17349
Sequence    

Annotation

kegg
ID pop:POPTR_0005s18480g
description POPTRDRAFT_558891; hypothetical protein
nr
ID XP_011008784.1
description PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
swissprot
ID Q9FH92
description Protein IRX15-LIKE OS=Arabidopsis thaliana GN=IRX15-L PE=2 SV=1
trembl
ID B9H6J2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s18480g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002750_030 0.0 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
2 Hb_000836_640 0.0478754379 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
3 Hb_000162_010 0.0569628809 - - PREDICTED: dirigent protein 23 [Jatropha curcas]
4 Hb_001477_050 0.0574008754 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
5 Hb_005056_040 0.0605355852 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
6 Hb_001500_090 0.0611541301 - - conserved hypothetical protein [Ricinus communis]
7 Hb_064047_020 0.0619052111 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
8 Hb_011912_010 0.0642426939 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
9 Hb_001307_180 0.0678078133 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
10 Hb_000776_090 0.0710871299 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
11 Hb_012633_020 0.074322088 - - laccase, putative [Ricinus communis]
12 Hb_006065_030 0.0745617431 - - PREDICTED: filament-like plant protein 7 isoform X1 [Jatropha curcas]
13 Hb_000413_030 0.0764583949 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
14 Hb_000193_320 0.0794064967 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005523_030 0.0810266892 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
16 Hb_003645_040 0.0819281576 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
17 Hb_002276_120 0.0847940255 - - hypothetical protein POPTR_0010s14710g [Populus trichocarpa]
18 Hb_000334_030 0.0853323495 - - conserved hypothetical protein [Ricinus communis]
19 Hb_042083_010 0.0858687531 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
20 Hb_001051_060 0.0881740924 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_002750_030 Hb_002750_030 Hb_000836_640 Hb_000836_640 Hb_002750_030--Hb_000836_640 Hb_000162_010 Hb_000162_010 Hb_002750_030--Hb_000162_010 Hb_001477_050 Hb_001477_050 Hb_002750_030--Hb_001477_050 Hb_005056_040 Hb_005056_040 Hb_002750_030--Hb_005056_040 Hb_001500_090 Hb_001500_090 Hb_002750_030--Hb_001500_090 Hb_064047_020 Hb_064047_020 Hb_002750_030--Hb_064047_020 Hb_000836_640--Hb_001477_050 Hb_000776_090 Hb_000776_090 Hb_000836_640--Hb_000776_090 Hb_000836_640--Hb_000162_010 Hb_001307_180 Hb_001307_180 Hb_000836_640--Hb_001307_180 Hb_005523_030 Hb_005523_030 Hb_000836_640--Hb_005523_030 Hb_000162_010--Hb_000776_090 Hb_000162_010--Hb_001477_050 Hb_000162_010--Hb_005056_040 Hb_002276_120 Hb_002276_120 Hb_000162_010--Hb_002276_120 Hb_001477_050--Hb_005056_040 Hb_024074_030 Hb_024074_030 Hb_001477_050--Hb_024074_030 Hb_000037_150 Hb_000037_150 Hb_001477_050--Hb_000037_150 Hb_005056_040--Hb_000037_150 Hb_005056_040--Hb_000836_640 Hb_005056_040--Hb_024074_030 Hb_005056_040--Hb_001500_090 Hb_000193_320 Hb_000193_320 Hb_001500_090--Hb_000193_320 Hb_001500_090--Hb_000776_090 Hb_001500_090--Hb_000836_640 Hb_009476_080 Hb_009476_080 Hb_001500_090--Hb_009476_080 Hb_001500_090--Hb_001477_050 Hb_000413_030 Hb_000413_030 Hb_064047_020--Hb_000413_030 Hb_011912_010 Hb_011912_010 Hb_064047_020--Hb_011912_010 Hb_002085_060 Hb_002085_060 Hb_064047_020--Hb_002085_060 Hb_003645_040 Hb_003645_040 Hb_064047_020--Hb_003645_040 Hb_070771_010 Hb_070771_010 Hb_064047_020--Hb_070771_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.67087 5.77684 251.561 0.0628242 0.0720994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.28385 132.903

CAGE analysis