Hb_000162_010

Information

Type -
Description -
Location Contig162: 15005-15592
Sequence    

Annotation

kegg
ID tcc:TCM_006669
description Disease resistance-responsive family protein, putative
nr
ID XP_012092578.1
description PREDICTED: dirigent protein 23 [Jatropha curcas]
swissprot
ID Q84TH6
description Dirigent protein 23 OS=Arabidopsis thaliana GN=DIR23 PE=2 SV=1
trembl
ID A0A067JCE3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06372 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000162_010 0.0 - - PREDICTED: dirigent protein 23 [Jatropha curcas]
2 Hb_000836_640 0.0494015969 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
3 Hb_002750_030 0.0569628809 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
4 Hb_000776_090 0.0572617929 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
5 Hb_001477_050 0.0654437259 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
6 Hb_005056_040 0.0745452136 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
7 Hb_002276_120 0.0758103281 - - hypothetical protein POPTR_0010s14710g [Populus trichocarpa]
8 Hb_002739_140 0.07648557 - - PREDICTED: protein TPX2 [Jatropha curcas]
9 Hb_010488_050 0.0765943404 transcription factor TF Family: LIM hypothetical protein JCGZ_14428 [Jatropha curcas]
10 Hb_000193_320 0.0778779298 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001500_090 0.0804292873 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006065_030 0.0827932253 - - PREDICTED: filament-like plant protein 7 isoform X1 [Jatropha curcas]
13 Hb_004920_150 0.0833329404 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012633_020 0.0856962245 - - laccase, putative [Ricinus communis]
15 Hb_005523_030 0.0859986903 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
16 Hb_024074_030 0.0879007312 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
17 Hb_050514_030 0.0879684164 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
18 Hb_001307_180 0.0895542288 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
19 Hb_000086_490 0.0920738186 - - cellulose synthase [Populus tomentosa]
20 Hb_011912_010 0.0950606206 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000162_010 Hb_000162_010 Hb_000836_640 Hb_000836_640 Hb_000162_010--Hb_000836_640 Hb_002750_030 Hb_002750_030 Hb_000162_010--Hb_002750_030 Hb_000776_090 Hb_000776_090 Hb_000162_010--Hb_000776_090 Hb_001477_050 Hb_001477_050 Hb_000162_010--Hb_001477_050 Hb_005056_040 Hb_005056_040 Hb_000162_010--Hb_005056_040 Hb_002276_120 Hb_002276_120 Hb_000162_010--Hb_002276_120 Hb_000836_640--Hb_001477_050 Hb_000836_640--Hb_000776_090 Hb_000836_640--Hb_002750_030 Hb_001307_180 Hb_001307_180 Hb_000836_640--Hb_001307_180 Hb_005523_030 Hb_005523_030 Hb_000836_640--Hb_005523_030 Hb_002750_030--Hb_001477_050 Hb_002750_030--Hb_005056_040 Hb_001500_090 Hb_001500_090 Hb_002750_030--Hb_001500_090 Hb_064047_020 Hb_064047_020 Hb_002750_030--Hb_064047_020 Hb_000776_090--Hb_005523_030 Hb_000086_490 Hb_000086_490 Hb_000776_090--Hb_000086_490 Hb_002739_140 Hb_002739_140 Hb_000776_090--Hb_002739_140 Hb_050514_030 Hb_050514_030 Hb_000776_090--Hb_050514_030 Hb_001477_050--Hb_005056_040 Hb_024074_030 Hb_024074_030 Hb_001477_050--Hb_024074_030 Hb_000037_150 Hb_000037_150 Hb_001477_050--Hb_000037_150 Hb_005056_040--Hb_000037_150 Hb_005056_040--Hb_000836_640 Hb_005056_040--Hb_024074_030 Hb_005056_040--Hb_001500_090 Hb_002276_120--Hb_002750_030 Hb_002276_120--Hb_005056_040 Hb_002276_120--Hb_000836_640 Hb_002276_120--Hb_001477_050 Hb_002276_120--Hb_024074_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.313515 9.4072 3.99379 290.798 0.354644 0.203887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.142611 2.55226 181.264

CAGE analysis