Hb_002276_120

Information

Type -
Description -
Location Contig2276: 125654-128148
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14710g
description POPTRDRAFT_659018; hypothetical protein
nr
ID XP_002314913.2
description hypothetical protein POPTR_0010s14710g [Populus trichocarpa]
swissprot
ID Q7VG78
description Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1
trembl
ID B9HWT9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14710g PE=4 SV=2
Gene Ontology
ID GO:0008725
description dna glycosylase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002276_120 0.0 - - hypothetical protein POPTR_0010s14710g [Populus trichocarpa]
2 Hb_000162_010 0.0758103281 - - PREDICTED: dirigent protein 23 [Jatropha curcas]
3 Hb_002750_030 0.0847940255 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
4 Hb_005056_040 0.0888852248 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
5 Hb_000836_640 0.0965704359 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
6 Hb_001477_050 0.0992336135 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
7 Hb_024074_030 0.110059795 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
8 Hb_064047_020 0.1105844967 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
9 Hb_000776_090 0.112856137 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
10 Hb_003645_040 0.1132162707 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
11 Hb_000193_320 0.1135703719 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006065_030 0.1138409629 - - PREDICTED: filament-like plant protein 7 isoform X1 [Jatropha curcas]
13 Hb_001500_090 0.1152389631 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011912_010 0.1173279471 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
15 Hb_012633_020 0.1174240737 - - laccase, putative [Ricinus communis]
16 Hb_001307_180 0.1188415111 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
17 Hb_010488_050 0.121823028 transcription factor TF Family: LIM hypothetical protein JCGZ_14428 [Jatropha curcas]
18 Hb_002660_180 0.1244106108 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000037_150 0.1274463159 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
20 Hb_000413_030 0.1282869534 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002276_120 Hb_002276_120 Hb_000162_010 Hb_000162_010 Hb_002276_120--Hb_000162_010 Hb_002750_030 Hb_002750_030 Hb_002276_120--Hb_002750_030 Hb_005056_040 Hb_005056_040 Hb_002276_120--Hb_005056_040 Hb_000836_640 Hb_000836_640 Hb_002276_120--Hb_000836_640 Hb_001477_050 Hb_001477_050 Hb_002276_120--Hb_001477_050 Hb_024074_030 Hb_024074_030 Hb_002276_120--Hb_024074_030 Hb_000162_010--Hb_000836_640 Hb_000162_010--Hb_002750_030 Hb_000776_090 Hb_000776_090 Hb_000162_010--Hb_000776_090 Hb_000162_010--Hb_001477_050 Hb_000162_010--Hb_005056_040 Hb_002750_030--Hb_000836_640 Hb_002750_030--Hb_001477_050 Hb_002750_030--Hb_005056_040 Hb_001500_090 Hb_001500_090 Hb_002750_030--Hb_001500_090 Hb_064047_020 Hb_064047_020 Hb_002750_030--Hb_064047_020 Hb_005056_040--Hb_001477_050 Hb_000037_150 Hb_000037_150 Hb_005056_040--Hb_000037_150 Hb_005056_040--Hb_000836_640 Hb_005056_040--Hb_024074_030 Hb_005056_040--Hb_001500_090 Hb_000836_640--Hb_001477_050 Hb_000836_640--Hb_000776_090 Hb_001307_180 Hb_001307_180 Hb_000836_640--Hb_001307_180 Hb_005523_030 Hb_005523_030 Hb_000836_640--Hb_005523_030 Hb_001477_050--Hb_024074_030 Hb_001477_050--Hb_000037_150 Hb_002660_180 Hb_002660_180 Hb_024074_030--Hb_002660_180 Hb_024074_030--Hb_000037_150 Hb_000696_130 Hb_000696_130 Hb_024074_030--Hb_000696_130 Hb_002636_170 Hb_002636_170 Hb_024074_030--Hb_002636_170 Hb_024074_030--Hb_001307_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.106997 0.0253112 3.7674 0.0496463 0.0170709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0711599 2.09252

CAGE analysis